Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000618 (lpxA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000618 showshow history
Names
lpxA JW0176 ECK0180 b0181
Product
UDP-N-acetylglucosamine acyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 202560 203348 789 263
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000116
EnteroFam0000618: Trusted threshold=746; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010137 (IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase) Apr 2008
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Apr 2008
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Apr 2008
Automated Process Approved IPR029098 (IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal) Jul 2018
Automated Process Approved PF00132 (PF00132 Bacterial transferase hexapeptide (six repeats)) Jul 2018
Automated Process Approved PF13720 (PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Direct Assay - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042802 identical protein binding GO Inferred from Direct Assay - PubMed ID: 7481807
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Person Approved GO molecular function GO:0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO Inferred from Direct Assay - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name lpxA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0176 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0180 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0181 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-N-acetylglucosamine acyltransferase Experimental - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Person Approved alternate product name UDP-GlcNAc acyltransferase Experimental - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Protein Family
Person Approved EnteroFam EnteroFam0000618: Trusted threshold=746; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000116
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Protein Sequence Similarity - PFAM Model Name: PF13720
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00132 Bacterial transferase hexapeptide (six repeats) Protein Sequence Similarity - PFAM Model Name: PF00132
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR029098
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Protein Sequence Similarity - InterPro Domain: IPR010137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.129 Published Annotation - Swiss-Prot Accession Number: P0A722 Feb 2006
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment functional enzyme has a homotrimeric structure Experimental - PubMed ID: 7481807
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Person Uncurated comment the hydroxyl moeity of the substrate R-3-hydromyristoyl-ACP is required for LpxA activity Experimental - PubMed ID: 8366124
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Automated Process Approved db xref EcoGene:EG10545 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000618 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A722 Published Annotation - Swiss-Prot Accession Number: P0A722 Jan 2006
Automated Process Approved db xref GeneID:944849 Published Annotation - Entrez Gene Database ID: 944849
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786378 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A722 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function first step of the Lipid A (endotoxin) biosynthetic pathway Experimental - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Person Approved function transfers R-3-hydroxymyristoyl residue from R-3-hydroxymyristoyl-acyl carrier protein to position 3 of the GlcNac moiety of UDP-N-acetylglucosamine to form UPD-0-(R-3-hydroxymyristoyl)-N-acetylglucosamine Experimental - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Person Approved function enzyme; Surface polysaccharides & antigens Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction binds to myristoyl-ACP which competively inhibits enzymatic activity Experimental - PubMed ID: 8366124
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Person Approved molecular interaction absolute requirement for acyl-carrier protein (ACP) thioester as a donor substrate Experimental - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Person Uncurated mutant phenotype lpxA2 conditional, growth defect (reduced viability after 1h), loss of UDP-GlcNAc acyltransferase activity; nonpermissive temperature 42C; rescued with plasmid-borne w.t. allele Experimental - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved note UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated physical properties Molecular weight: approximately 90 kD; by gel filtration Experimental - PubMed ID: 8366124
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Person Uncurated physical properties Km: 1.58 +/- 0.15 microM; for R-3-hydroxymyristoyl-ACP Experimental - PubMed ID: 8366124
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Person Uncurated physical properties Km: 99 +/- 11 microM; for UDP-GlcNAc Experimental - PubMed ID: 8366124
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Automated Process Approved protein id AAC73292.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1LXA mutant; S64Q, V65F, D125H, whole protein, pure:2.6 A; X-ray diffraction Experimental - PubMed ID: 7481807
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Approved subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 2180947
Reference: Escherichia coli K-12 		Dec 2007
Person Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Direct Assay - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Automated Process Approved GO molecular function GO:0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001451
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042802 identical protein binding GO Inferred from Direct Assay - PubMed ID: 7481807
Reference: Escherichia coli K-12 MC1061 		Dec 2007
Person Approved GO molecular function GO:0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO Inferred from Direct Assay - PubMed ID: 3549716
Reference: Escherichia coli K-12 		Dec 2007
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000116 lpxA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000692 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000508 lpxA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000511 lpxA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000493 lpxA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000776 lpxA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000627 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001599 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000843 lpxA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003377 lpxA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001037 lpxA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001447 lpxA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008165 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017469 lpxA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000984 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001218 lpxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298698 lpxA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002948 lpxA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000942 lpxA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000669 lpxA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009286 lpxA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000190 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006336 lpxA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000176 lpxA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004117 lpxA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009540 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007902 lpxA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007283 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076283 lpxA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000186 lpxA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000236 lpxA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005833 lpxA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006848 lpxA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000192 lpxA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004634 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002479 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009434 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007940 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008623 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010280 lpxA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005031 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010285 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008760 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009364 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010529 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010193 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009557 lpxA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024097 lpxA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007874 lpxA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004866 lpxA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000489 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000220 lpxA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000181 lpxA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000177 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000161 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000297 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000214 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174394 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000181 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000193 lpxA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130062 lpxA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001612 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000197 lpxA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002923 lpxA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004116 lpxA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000195 lpxA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003219 lpxA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007894 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000132 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004652 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000152 lpxA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004095 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000839 lpxA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003474 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008526 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004267 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287810 lpxA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003980 lpxA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061286 lpxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000565 lpxA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003588 lpxA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001680 lpxA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005592 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138327 lpxA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001576 lpxA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004448 lpxA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002917 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000256 lpxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004528 lpxA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000824 lpxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000794 lpxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008941 lpxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004632 lpxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008569 lpxA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004582 lpxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005078 lpxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008690 lpxA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004623 lpxA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005807 lpxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000238 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000236 lpxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000296 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004922 lpxA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008420 lpxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004347 lpxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004492 lpxA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105817 lpxA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081940 lpxA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000271 lpxA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091316 lpxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004254 lpxA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009229 lpxA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004542 lpxA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001908 lpxA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265207 lpxA CDS
Person Approved Go view Shigella boydii 227 ADV-0000179 lpxA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005572 lpxA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007958 lpxA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000213 lpxA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071112 lpxA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086532 lpxA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000168 lpxA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000207 lpxA CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001998 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002341 VC2248 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135887 lpxA CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000556 lpxA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007157 lpxA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002079 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009456 lpxA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003464 lpxA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002432 lpxA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000506 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241056 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007544 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000652 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005107 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002304 lpxA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118734 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008399 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007335 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001155 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009265 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006399 lpxA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032882 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005594 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003543 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001983 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006051 lpxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004978 lpxA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003093 lpxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003718 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001261 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002809 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000032 lpxA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 197560 to 208348
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000603rsePCDSforward196546197898Upstream
ABE-0000605bamACDSforward197928200360Upstream
ABE-0000608skpCDSforward200482200967Upstream
ABE-0000610lpxDCDSforward200971201996Upstream
ABE-0000613fabZCDSforward202101202556Upstream
ABE-0000618lpxACDSforward202560203348Matches
ABE-0000620lpxBCDSforward203348204496Overlaps Downstream
ABE-0000622rnhBCDSforward204493205089Downstream
ABE-0000624dnaECDSforward205126208608Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.