Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000620 (lpxB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000620 showshow history
Names
lpxB JW0177 ECK0181 pgsB b0182
Product
tetraacyldisaccharide-1-P synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 203348 204496 1149 383
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000117
EnteroFam0000620: Trusted threshold=1048.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003835 (IPR003835 Glycosyl transferase, family 19) Apr 2008
Automated Process Approved PF02684 (PF02684 Lipid-A-disaccharide synthetase) Jul 2018
Automated Process Uncurated GT19 (GT19 Glycosyl Transferase Family 19) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008915 lipid-A-disaccharide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name lpxB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0177 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0181 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pgsB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0182 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product tetraacyldisaccharide-1-P synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000620: Trusted threshold=1048.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000117
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02684 Lipid-A-disaccharide synthetase Protein Sequence Similarity - PFAM Model Name: PF02684
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003835 Glycosyl transferase, family 19 Protein Sequence Similarity - InterPro Domain: IPR003835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GT19 Glycosyl Transferase Family 19 Protein Sequence Similarity - CAZy Model Name: GT19
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.1.182 Published Annotation - Swiss-Prot Accession Number: P10441 Feb 2006
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000620 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10546 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944838 Published Annotation - Entrez Gene Database ID: 944838
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786379 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P10441 Published Annotation - Swiss-Prot Accession Number: P10441 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10441 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule metabolism: Lipopolysaccharide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73293.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008915 lipid-A-disaccharide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000117 lpxB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000693 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000509 lpxB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000393 lpxB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000494 lpxB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000347 lpxB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000626 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001600 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000844 lpxB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003376 lpxB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001038 lpxB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001448 lpxB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008164 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017470 lpxB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000985 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001219 lpxB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298709 lpxB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002947 lpxB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000943 lpxB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000668 lpxB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009287 lpxB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000191 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006335 lpxB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000177 lpxB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004116 lpxB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009539 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007903 lpxB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007282 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076284 lpxB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000187 lpxB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000237 lpxB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005834 lpxB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006847 lpxB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000193 lpxB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004635 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002480 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007941 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008624 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010281 lpxB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005032 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010284 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008761 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010623 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009365 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010528 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010192 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009558 lpxB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024098 lpxB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007873 lpxB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004867 lpxB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000490 lpxB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000221 lpxB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000182 lpxB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000176 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000160 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000296 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000215 lpxB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174395 lpxB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000182 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000194 lpxB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130063 lpxB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001613 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000198 lpxB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002922 lpxB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004115 lpxB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000196 lpxB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003220 lpxB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007893 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000133 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004653 lpxB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000153 lpxB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004094 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000840 lpxB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003473 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008527 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004268 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287811 lpxB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003981 lpxB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061287 lpxB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003007 lpxB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003587 lpxB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001681 lpxB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005593 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138330 lpxB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001577 lpxB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004449 lpxB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002916 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000257 lpxB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004529 lpxB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000835 lpxB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000804 lpxB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008942 lpxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004633 lpxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008570 lpxB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004583 lpxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005079 lpxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008691 lpxB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004624 lpxB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005806 lpxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000239 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000237 lpxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000297 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004923 lpxB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008419 lpxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004348 lpxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004493 lpxB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105827 lpxB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081941 lpxB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000272 lpxB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091319 lpxB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004253 lpxB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009228 lpxB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004543 lpxB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001909 lpxB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265208 lpxB CDS
Person Approved Go view Shigella boydii 227 ADV-0000180 lpxB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005573 lpxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007957 lpxB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000214 lpxB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071113 lpxB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086533 lpxB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000169 lpxB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000208 lpxB CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001997 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002340 VC2247 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135886 lpxB CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000555 lpxB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007156 lpxB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002080 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009454 lpxB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003465 lpxB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002431 lpxB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000505 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241055 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007543 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000653 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005108 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002303 lpxB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118744 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008398 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007334 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001154 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009266 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006398 lpxB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032881 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005593 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003542 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001982 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006050 lpxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004979 lpxB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003092 lpxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003717 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001262 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002813 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000031 lpxB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 198348 to 209496
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000605bamACDSforward197928200360Upstream
ABE-0000608skpCDSforward200482200967Upstream
ABE-0000610lpxDCDSforward200971201996Upstream
ABE-0000613fabZCDSforward202101202556Upstream
ABE-0000618lpxACDSforward202560203348Overlaps Upstream
ABE-0000620lpxBCDSforward203348204496Matches
ABE-0000622rnhBCDSforward204493205089Overlaps Downstream
ABE-0000624dnaECDSforward205126208608Downstream
ABE-0000630accACDSforward208621209580Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.