Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000657 (proS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000657 showshow history
Names
proS drpA JW0190 ECK0194 drp b0194
Product
prolyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 217057 218775 1719 573
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000124
EnteroFam0000657: Trusted threshold=1656.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002316 (IPR002316 Proline-tRNA ligase, class IIa) Apr 2008
Automated Process Approved IPR004500 (IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type) Apr 2008
Automated Process Approved IPR002314 (IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)) Apr 2008
Automated Process Approved IPR007214 (IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain) Apr 2008
Automated Process Approved IPR004154 (IPR004154 Anticodon-binding) Apr 2008
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Apr 2008
Automated Process Approved IPR036754 (IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily) Jul 2018
Automated Process Approved PF04073 (PF04073 Aminoacyl-tRNA editing domain) Jul 2018
Automated Process Approved PF03129 (PF03129 Anticodon binding domain) Jul 2018
Automated Process Approved PF00587 (PF00587 tRNA synthetase class II core domain (G, H, P, S and T)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006433 prolyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007214, IPR036754
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004827 proline-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name proS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym drpA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0194 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym drp Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0190 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0194 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product prolyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name proline tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000657: Trusted threshold=1656.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000124
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR004500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04073 Aminoacyl-tRNA editing domain Protein Sequence Similarity - PFAM Model Name: PF04073
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03129 Anticodon binding domain Protein Sequence Similarity - PFAM Model Name: PF03129
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Protein Sequence Similarity - PFAM Model Name: PF00587
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036754
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004154 Anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002316 Proline-tRNA ligase, class IIa Protein Sequence Similarity - InterPro Domain: IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Protein Sequence Similarity - InterPro Domain: IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Protein Sequence Similarity - InterPro Domain: IPR007214
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.15 Published Annotation - Swiss-Prot Accession Number: P16659 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10770 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786392 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P16659 Published Annotation - Swiss-Prot Accession Number: P16659 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16659 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949116 Published Annotation - Entrez Gene Database ID: 949116
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0000657 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note proline tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73305.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006433 prolyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004500
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007214, IPR036754
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004827 proline-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000124 proS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002013 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000289 proS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000244 proS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000418 proS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000772 proS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003308 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129509 proS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104947 proS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104350 proS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000858 proS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003363 proS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001051 proS CDS
Person Uncurated Go view Citrobacter braakii GTA-CB04 AVB-0003919 CDS
Person Uncurated Go view Citrobacter freundii 4_7_47CFAA ARK-0001753 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001461 proS CDS
Person Uncurated Go view Citrobacter freundii ATCC 8090 [T] (AToL DRAFT) API-0004697 proS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005376 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020447 proS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003384 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001231 proS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298740 proS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002934 proS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000955 proS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000656 proS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009300 proS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000205 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006322 proS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000189 proS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004103 proS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009525 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007917 proS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007268 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076301 proS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000200 proS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000253 proS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005848 proS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006831 proS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000206 proS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004650 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002494 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009449 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007954 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009447 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010294 proS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005045 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010271 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008775 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009378 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010834 proS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010178 proS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009571 proS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024110 proS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006467 proS_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004881 proS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000503 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000233 proS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000195 proS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000163 proS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000147 proS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000283 proS CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000230 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000197 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000207 proS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130075 proS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001627 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000211 proS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002909 proS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000323 proS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000209 proS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003232 proS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005372 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000144 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004664 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000164 proS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004083 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000851 proS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003462 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008538 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004279 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287822 proS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003991 proS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063843 proS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002016 proS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002086 proS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003961 proS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008503 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138345 proS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004057 proS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004462 proS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002902 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000270 proS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004542 proS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000876 proS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000843 proS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008957 proS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004646 proS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008583 proS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004596 proS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005092 proS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008704 proS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004637 proS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005793 proS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000252 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000250 proS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000312 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004936 proS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008406 proS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004362 proS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004507 proS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105856 proS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081956 proS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000285 proS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091357 proS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004239 proS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009215 proS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004556 proS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001928 proS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266777 proS CDS
Person Approved Go view Shigella boydii 227 ADV-0000193 proS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005586 proS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007944 proS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000230 proS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071127 proS CDS
Person Approved Go view Shigella flexneri 301 ABT-0086546 proS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000182 proS CDS
Person Approved Go view Shigella sonnei 046 ADD-0000223 proS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000939 VC0875 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000126 proS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007143 proS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002092 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009421 drpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003479 drpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002418 proS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000492 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241039 proS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007531 proS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000668 proS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005120 proS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002291 proS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118762 proS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008386 proS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007320 proS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001041 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009278 proS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006386 proS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032868 proS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005581 proS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003527 proS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001967 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006038 proS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004991 proS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003080 proS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003702 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001277 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002857 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000019 proS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 212057 to 223775
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000635yaeRCDSforward211877212266Downstream
ABE-0000638tilSCDSforward212331213629Downstream
ABE-0285334repeat_regionforward213632213668Downstream
ABE-0000641rofCDScomplement213678213932Downstream
ABE-0047214yaePCDScomplement213925214125Downstream
ABE-0000648yaeQCDSforward214291214836Downstream
ABE-0000650arfBCDSforward214833215255Downstream
ABE-0000652nlpECDSforward215269215979Downstream
ABE-0285335repeat_regionforward216027216137Downstream
ABE-0000655yaeFCDScomplement216179217003Downstream
ABE-0000657proSCDScomplement217057218775Matches
ABE-0000661trmOCDScomplement218887219594Upstream
ABE-0000663rcsFCDScomplement219591219995Upstream
ABE-0000666metQCDScomplement220113220928Upstream
ABE-0000668metICDScomplement220968221621Upstream
ABE-0000671metNCDScomplement221614222645Upstream
ABE-0000675gmhBCDSforward222833223408Upstream
ABE-0000677rrsHrRNAforward223771225312Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.