Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000666 (metQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000666 showshow history
Names
metQ JW0193 ECK0197 metD yaeC b0197
Product
receptor component of DL-methionine uptake transporter (MUT)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 220113 220928 816 272
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004478 (IPR004478 (DEPRECATED) Lipoprotein YaeC) Apr 2008
Automated Process Approved IPR004872 (IPR004872 Lipoprotein NlpA family) Apr 2008
Automated Process Approved PF03180 (PF03180 NLPA lipoprotein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name metQ Experimental - PubMed ID: 12218041
Reference: Escherichia coli 		Oct 2003
Person Approved synonym JW0193 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym metD Experimental - PubMed ID: 12218041
Reference: Escherichia coli 		Oct 2003
Person Approved synonym ECK0197 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yaeC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0197 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product receptor component of DL-methionine uptake transporter (MUT) Published Sequence Analysis - PubMed ID: 12819857
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Approved alternate product name DL-methionine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name D-methionine transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF03180 NLPA lipoprotein Protein Sequence Similarity - PFAM Model Name: PF03180
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004478 (DEPRECATED) Lipoprotein YaeC Protein Sequence Similarity - InterPro Domain: IPR004478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004872 Lipoprotein NlpA family Protein Sequence Similarity - InterPro Domain: IPR004872
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P28635 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P28635 Published Annotation - Swiss-Prot Accession Number: P28635 Jan 2005
Automated Process Approved db xref GeneID:944893 Published Annotation - Entrez Gene Database ID: 944893
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0000666 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786396 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11504 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.2 location of gene products; periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 4.3.A.1.p transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function Transport of small molecules: Amino acids, amines Experimental - PubMed ID: 12218041
Reference: Escherichia coli 		Oct 2003
Automated Process Approved function 6.1 cell structure; membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note D-methionine transport protein (ABC superfamily, peri_bind); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0042597 - periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73308.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001008 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000920 metQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001055 metQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001437 metQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001283 metQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003311 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000862 metQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003360 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001054 metQ_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001464 metQ_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005379 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020450 metQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003381 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001234 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298751 metQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002931 metQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000958 metQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000653 metQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009303 metQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000208 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006319 metQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000192 metQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004100 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009520 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007920 metQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007265 metQ CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076304 metQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000203 metQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000256 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005851 metQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006828 metQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000209 metQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004653 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002497 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009452 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007957 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009450 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010297 metQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005048 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010268 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008778 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010640 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009381 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010831 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010175 metQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009574 metQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024113 metQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006464 metQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004884 metQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000506 metQ CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000236 metQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000198 metQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000160 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000144 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000280 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000233 metQ CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174415 metQ CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000200 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000210 metQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130078 metQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001630 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000214 metQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002906 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000326 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000212 metQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003235 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005375 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000147 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004667 metQ CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000167 metQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004080 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000854 metQ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003459 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008541 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004282 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287825 metQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003994 metQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063840 metQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002026 metQ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002083 metQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003958 metQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008498 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138352 metQ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005338 metQ-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004465 metQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002898 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000273 yaeC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004545 metQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000887 yaeC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000854 yaeC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008960 metQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004649 metQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008586 metQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004599 metQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005095 metQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008707 metQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004640 metQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005790 metQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000255 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000253 yaeC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000315 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004939 metQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008403 metQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004365 metQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004510 metQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105864 yaeC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081959 yaeC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000288 metQ CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091366 yaeC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004236 metQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009212 metQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004559 metQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001931 CDS
Person Approved Go view Shigella boydii 227 ADV-0000196 yaeC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005589 metQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007941 metQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000233 yaeC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071130 yaeC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086549 yaeC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000185 yaeC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000226 metQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000969 VC0905 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007135 metQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002095 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009411 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003482 metQ_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002415 metQ_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000489 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241036 nlpA2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007528 metQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000672 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005123 metQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002288 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118770 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008383 metQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007317 metQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001043 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009281 metQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006383 metQ CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032865 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005578 metQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003522 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001962 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006035 metQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004994 metQ CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003077 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003697 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001281 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002877 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000016 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23331mutantTn5 InsertionRequest the StrainABE-0000666metQyaeC::Tn5KAN-I-SceI at position 68 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 215113 to 225928
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000650arfBCDSforward214833215255Downstream
ABE-0000652nlpECDSforward215269215979Downstream
ABE-0285335repeat_regionforward216027216137Downstream
ABE-0000655yaeFCDScomplement216179217003Downstream
ABE-0000657proSCDScomplement217057218775Downstream
ABE-0000661trmOCDScomplement218887219594Downstream
ABE-0000663rcsFCDScomplement219591219995Downstream
ABE-0000666metQCDScomplement220113220928Matches
ABE-0000668metICDScomplement220968221621Upstream
ABE-0000671metNCDScomplement221614222645Upstream
ABE-0000675gmhBCDSforward222833223408Upstream
ABE-0000677rrsHrRNAforward223771225312Upstream
ABE-0000679ileVtRNAforward225381225457Upstream
ABE-0000682alaVtRNAforward225500225575Upstream
ABE-0000684rrlHrRNAforward225759228662Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.