Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000668 (metI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000668 showshow history
Names
metI JW0194 ECK0198 metD yaeE b0198
Product
membrane component of DL-methionine uptake transporter (MUT)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 220968 221621 654 218
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000127
EnteroFam0000668: Trusted threshold=582.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name metI Experimental - PubMed ID: 12218041
Reference: Escherichia coli
Oct 2003
Person Approved synonym yaeE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym metD Experimental - PubMed ID: 12218041
Reference: Escherichia coli
Oct 2003
Person Approved synonym ECK0198 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0194 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0198 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of DL-methionine uptake transporter (MUT) Published Sequence Analysis - PubMed ID: 12819857
Reference: Escherichia coli K-12
Feb 2007
Person Approved alternate product name D- and L-methionine transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name DL-methionine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved alternate product name membrane component subunit of ABC superfamily DL-methionine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0000668: Trusted threshold=582.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000127
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:944894 Published Annotation - Entrez Gene Database ID: 944894
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P31547 Published Annotation - Swiss-Prot Accession Number: P31547 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31547 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0000668 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786397 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11737 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 7.3 location of gene products; inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 6.1 cell structure; membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 4.3.A.1.m transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function Transport of small molecules: Amino acids, amines Experimental - PubMed ID: 12218041
Reference: Escherichia coli
Oct 2003
Automated Process Approved note D- and L-methionine transport protein (ABC superfamily, membrane); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73309.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000127 metI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000131 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001139 metI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001236 metI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001438 metI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001282 metI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003312 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000863 metI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003359 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001055 metI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001465 metI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005381 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020453 metI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003380 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001235 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298756 metI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002930 metI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000959 metI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000652 metI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009304 metI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000209 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006318 metI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000193 metI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004099 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009519 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007921 metI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007264 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076305 metI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000204 metI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000257 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005852 metI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006827 metI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000210 metI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004654 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002498 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009453 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007958 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009451 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010298 metI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005049 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010267 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008779 metI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009382 metI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010174 metI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009575 metI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024114 metI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006463 metI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004885 metI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000507 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000237 metI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000199 metI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000159 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000143 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000279 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000234 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174416 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000201 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000211 metI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130079 metI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001631 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000215 metI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002905 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000327 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000213 metI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003236 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005377 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000148 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004668 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000168 metI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004079 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000855 metI CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003458 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008542 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004283 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287826 metI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003995 metI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063839 metI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002027 metI CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004184 metI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003957 metI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008497 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138354 metI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004466 metI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002897 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000274 metI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004546 metI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000891 yaeE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000858 yaeE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008961 metI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004650 metI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008587 metI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004600 metI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005096 metI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008708 metI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004641 metI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005789 metI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000256 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000254 metI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000316 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004940 metI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008402 metI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004366 metI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004511 metI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105866 metI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081960 metI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000289 yaeE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091369 metI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004235 metI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009211 metI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004560 metI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001932 CDS
Person Approved Go view Shigella boydii 227 ADV-0000197 yaeE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005590 metI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007940 metI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000234 yaeE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071131 metI CDS
Person Approved Go view Shigella flexneri 301 ABT-0086550 metI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000186 yaeE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000227 metI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000970 VC0906 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007134 metI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002096 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009407 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003483 metI_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002414 metI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000488 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241030 metI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007527 metI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000674 metI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005124 metI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002287 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118772 metI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008382 metI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007316 metI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001044 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009282 metI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006382 metI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032864 metI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005577 metI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003521 metI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001961 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006034 metI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004995 metI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003076 metI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003696 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001283 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002879 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000015 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20039mutantTn5 InsertionRequest the StrainABE-0000668metIyaeE::Tn5KAN-I-SceI at position 605 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 215968 to 226621
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000652nlpECDSforward215269215979Downstream
ABE-0285335repeat_regionforward216027216137Downstream
ABE-0000655yaeFCDScomplement216179217003Downstream
ABE-0000657proSCDScomplement217057218775Downstream
ABE-0000661trmOCDScomplement218887219594Downstream
ABE-0000663rcsFCDScomplement219591219995Downstream
ABE-0000666metQCDScomplement220113220928Downstream
ABE-0000668metICDScomplement220968221621Matches
ABE-0000671metNCDScomplement221614222645Overlaps Upstream
ABE-0000675gmhBCDSforward222833223408Upstream
ABE-0000677rrsHrRNAforward223771225312Upstream
ABE-0000679ileVtRNAforward225381225457Upstream
ABE-0000682alaVtRNAforward225500225575Upstream
ABE-0000684rrlHrRNAforward225759228662Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.