Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000671 (metN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000671 showshow history
Names
metN JW0195 ECK0199 metD abc b0199
Product
ATP-binding component of DL-methionine uptake transporter (MUT)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 221614 222645 1032 344
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000128
EnteroFam0000671: Trusted threshold=940; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR012692 (IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria) Apr 2008
Automated Process Approved IPR018449 (IPR018449 NIL domain) Jul 2018
Automated Process Approved IPR026253 (IPR026253 Methionine import ATP-binding protein MetN) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF09383 (PF09383 NIL domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0048473 D-methionine transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0015821 methionine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026253
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0048474 (DEPRECATED) D-methionine transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026253
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name metN Experimental - PubMed ID: 12218041
Reference: Escherichia coli 		Oct 2003
Person Approved synonym ECK0199 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym metD Experimental - PubMed ID: 12218041
Reference: Escherichia coli 		Oct 2003
Person Approved synonym abc Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0195 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0199 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of DL-methionine uptake transporter (MUT) Published Sequence Analysis - PubMed ID: 12819857
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name D- and L-methionine transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name ATP-binding component of ABC superfamily DL-methionine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name DL-methionine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0000671: Trusted threshold=940; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000128
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09383 NIL domain Protein Sequence Similarity - PFAM Model Name: PF09383
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR026253 Methionine import ATP-binding protein MetN Protein Sequence Similarity - InterPro Domain: IPR026253
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018449 NIL domain Protein Sequence Similarity - InterPro Domain: IPR018449
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria Protein Sequence Similarity - InterPro Domain: IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.6.3.- Protein Sequence Similarity - InterPro Domain: IPR012692
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944896 Published Annotation - Entrez Gene Database ID: 944896
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786398 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P30750 Published Annotation - Swiss-Prot Accession Number: P30750 Jan 2005
Automated Process Approved db xref ASAP:ABE-0000671 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30750 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.1 location of gene products; cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 4.3.A.1.a transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function Transport of small molecules: Amino acids, amines Experimental - PubMed ID: 12218041
Reference: Escherichia coli 		Oct 2003
Automated Process Approved note D- and L-methionine transport protein (ABC superfamily, atp_bind); GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73310.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015821 methionine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026253
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0048473 D-methionine transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026253
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0048474 (DEPRECATED) D-methionine transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012692
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000128 metN CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000087 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001363 metN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001187 metN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000459 metN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000817 metN CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003313 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000864 metN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003358 metN CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001056 metN_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001466 metN_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005382 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020454 metN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003379 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001236 metN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298760 metN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000960 metN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000651 metN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009305 metN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000210 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006317 metN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000194 metN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004098 metN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009518 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007922 metN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007263 metN pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076306 metN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000205 metN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000258 metN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005853 metN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006826 metN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000211 metN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004655 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002499 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009454 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007959 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009452 metN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005050 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010266 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008780 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010642 metN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009383 metN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009576 metN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024115 metN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006462 metN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004886 metN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000508 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000238 metN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000200 metN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000158 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000142 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000278 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000235 metN CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174417 metN CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000202 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000212 metN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130080 metN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001632 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000216 metN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002904 metN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000328 metN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000214 metN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003237 metN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005378 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000149 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004669 metN CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000169 metN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004078 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000856 metN CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003457 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008543 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004284 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287827 metN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003996 metN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063838 metN CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004185 metN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003956 metN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008496 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138355 metN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005340 metN-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004467 metN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002896 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000275 metN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004547 metN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000895 abc CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000862 abc CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008962 metN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004651 metN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008588 metN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005097 metN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008709 metN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004642 metN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005788 metN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000257 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000255 metN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000317 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004941 metN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008401 metN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004367 metN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004512 metN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105869 metN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081961 metN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000290 metN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091371 metN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004234 metN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009210 metN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004561 metN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001933 metN CDS
Person Approved Go view Shigella boydii 227 ADV-0000198 abc CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005591 metN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000235 abc CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071132 metN CDS
Person Approved Go view Shigella flexneri 301 ABT-0086551 metN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000187 abc CDS
Person Approved Go view Shigella sonnei 046 ADD-0000228 metN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000971 VC0907 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007132 metN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002097 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009403 abc CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003484 metN_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002413 metN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000487 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241028 metN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007526 metN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000675 metN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005125 metN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002286 abc CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118780 metN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008381 metN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007315 metN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002537 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009283 metN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006381 metN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032863 metN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005576 metN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003520 metN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001960 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006033 metN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004996 metN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003075 metN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003695 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001284 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002884 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000014 metN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20040mutantTn5 InsertionRequest the StrainABE-0000671metNabc::Tn5KAN-2 at position 180 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 216614 to 227645
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000655yaeFCDScomplement216179217003Downstream
ABE-0000657proSCDScomplement217057218775Downstream
ABE-0000661trmOCDScomplement218887219594Downstream
ABE-0000663rcsFCDScomplement219591219995Downstream
ABE-0000666metQCDScomplement220113220928Downstream
ABE-0000668metICDScomplement220968221621Overlaps Downstream
ABE-0000671metNCDScomplement221614222645Matches
ABE-0000675gmhBCDSforward222833223408Upstream
ABE-0000677rrsHrRNAforward223771225312Upstream
ABE-0000679ileVtRNAforward225381225457Upstream
ABE-0000682alaVtRNAforward225500225575Upstream
ABE-0000684rrlHrRNAforward225759228662Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.