Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000675 (gmhB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000675 showshow history
Names
gmhB gmbX wcbN gmhX gmbC yaeD ECK0200 JW0196 b0200
Product
D,D-heptose 1,7-bisphosphate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 222833 223408 576 192
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000129
EnteroFam0000675: Trusted threshold=447.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004446 (IPR004446 D,D-heptose 1,7-bisphosphate phosphatase) Apr 2008
Automated Process Approved IPR006543 (IPR006543 Histidinol-phosphate phosphatase) Apr 2008
Automated Process Approved IPR006549 (IPR006549 HAD-superfamily hydrolase,subfamily IIIA) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF13242 (PF13242 HAD-hyrolase-like) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004446
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006543, IPR004446
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004401 histidinol-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gmhB Published Annotation - PubMed ID: 11751812
Reference: Escherichia coli K-12 		Jun 2006
Person Approved synonym ECK0200 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yaeD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym gmbC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym gmbX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym wcbN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym gmhX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0196 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0200 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D,D-heptose 1,7-bisphosphate phosphatase Experimental - PubMed ID: 11751812
Reference: Escherichia coli K-12 		Jun 2006
Protein Family
Person Approved EnteroFam EnteroFam0000675: Trusted threshold=447.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000129
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004446 D,D-heptose 1,7-bisphosphate phosphatase Protein Sequence Similarity - InterPro Domain: IPR004446
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13242 HAD-hyrolase-like Protein Sequence Similarity - PFAM Model Name: PF13242
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006543 Histidinol-phosphate phosphatase Protein Sequence Similarity - InterPro Domain: IPR006543
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006549 HAD-superfamily hydrolase,subfamily IIIA Protein Sequence Similarity - InterPro Domain: IPR006549
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P63228 Feb 2006
Automated Process Uncurated EC number 3.1.3.41 Published Annotation - Database Name: EC2GO: GO:0016791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11736 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786399 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P63228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P63228 Published Annotation - Swiss-Prot Accession Number: P63228 Jan 2006
Automated Process Approved db xref GeneID:944879 Published Annotation - Entrez Gene Database ID: 944879
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Surface polysaccharides and antigens Experimental - PubMed ID: 11751812
Reference: Escherichia coli 		Oct 2003
Person Uncurated function member of the biosynthetic pathway for ADP-L-beta-D-heptose, a precursor of the inner core lipopolysaccharide Experimental - PubMed ID: 11751812
Reference: Escherichia coli K-12 		Jun 2006
Automated Process Approved protein id AAC73311.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004446
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006543, IPR004446
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004401 histidinol-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000129 gmhB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002010 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001822 gmhB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001556 gmhB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000423 gmhB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001184 gmhB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003314 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000865 gmhB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003357 gmhB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001057 gmhB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001467 gmhB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005383 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046731 gmhB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003378 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001237 gmhB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298764 gmhB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000961 hisB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000650 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009306 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000211 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006316 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000195 yaeD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004097 gmhB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009517 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007262 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076307 gmhB CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000206 gmhB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000259 yaeD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005854 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006825 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000212 gmhB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004656 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002500 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009455 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007960 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009453 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005051 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008781 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010643 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009385 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009577 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024116 gmhB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006461 gmhB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004887 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000239 gmhB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000201 gmhB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000277 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000203 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000213 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130081 gmhB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001633 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000217 yaeD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002903 gmhB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000329 gmhB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000215 gmhB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003238 gmhB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005379 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000150 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004670 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000170 gmhB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004077 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000857 gmhB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003456 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008544 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004285 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287828 gmhB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003997 yaeD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063837 gmhB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002743 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000902 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003955 gmhB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008495 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138359 gmhB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000187 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004468 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002895 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005539 gmhB pseudogene
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004548 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000899 yaeD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000866 yaeD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008963 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004652 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005098 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008710 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004643 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005787 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000258 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000256 gmhB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000318 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004942 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008400 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004368 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105873 gmhB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081962 gmhB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000291 yaeD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091376 gmhB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004233 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004562 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001934 gmhB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266461 CDS
Person Approved Go view Shigella boydii 227 ADV-0000199 gmhB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005592 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000236 gmhB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071133 gmhB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086552 gmhB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000188 yaeD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000229 gmhB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000972 VC0908 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007129 gmhB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002098 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009401 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003485 gmhB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002412 gmhB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000486 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241027 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007525 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000676 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005126 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002285 gmhB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118784 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007314 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006380 gmhB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032862 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005575 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003519 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001959 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006032 gmhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004997 gmhB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003074 gmhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003694 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001285 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002895 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20041mutantTn5 InsertionRequest the StrainABE-0000675gmhByaeD::Tn5KAN-I-SceI at position 155 in Minus orientation ,+ pKD460Blattner Laboratory
FB20042mutantTn5 InsertionRequest the StrainABE-0000675gmhByaeD::Tn5KAN-I-SceI at position 155 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 217833 to 228408
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000657proSCDScomplement217057218775Upstream
ABE-0000661trmOCDScomplement218887219594Upstream
ABE-0000663rcsFCDScomplement219591219995Upstream
ABE-0000666metQCDScomplement220113220928Upstream
ABE-0000668metICDScomplement220968221621Upstream
ABE-0000671metNCDScomplement221614222645Upstream
ABE-0000675gmhBCDSforward222833223408Matches
ABE-0000677rrsHrRNAforward223771225312Downstream
ABE-0000679ileVtRNAforward225381225457Downstream
ABE-0000682alaVtRNAforward225500225575Downstream
ABE-0000684rrlHrRNAforward225759228662Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.