Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000704 (mltD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000704 showshow history
Names
mltD yafG dniR JW5018 ECK0211 b0211
Product
membrane-bound lytic murein transglycosylase D
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 232597 233955 1359 453
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000133
EnteroFam0000704: Trusted threshold=1131.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002482 (IPR002482 (DEPRECATED) Peptidoglycan-binding Lysin subgroup) Apr 2008
Automated Process Approved IPR010511 (IPR010511 Lytic murein transglycosylase D , lipid attachment domain) Apr 2008
Automated Process Approved IPR008258 (IPR008258 Transglycosylase SLT domain 1) Apr 2008
Automated Process Approved IPR000189 (IPR000189 Prokaryotic transglycosylase, active site) Apr 2008
Automated Process Approved IPR018392 (IPR018392 LysM domain) Jul 2018
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF01464 (PF01464 Transglycosylase SLT domain) Jul 2018
Automated Process Approved PF01476 (PF01476 LysM domain) Jul 2018
Automated Process Uncurated CBM50 (CBM50 Carbohydrate-Binding Module Family 50) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016998 cell wall macromolecule catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002482
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mltD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5018 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yafG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym dniR Published Annotation - PubMed ID: 1663890
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym ECK0211 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0211 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane-bound lytic murein transglycosylase D Published Sequence Analysis - PubMed ID: 10843862
Reference: Escherichia coli 		Feb 2007
Person Uncurated alternate product name lytic murein transglycosylase C, membrane-bound Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000704: Trusted threshold=1131.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000133
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010511 Lytic murein transglycosylase D , lipid attachment domain Protein Sequence Similarity - InterPro Domain: IPR010511
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002482 (DEPRECATED) Peptidoglycan-binding Lysin subgroup Protein Sequence Similarity - InterPro Domain: IPR002482
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008258 Transglycosylase SLT domain 1 Protein Sequence Similarity - InterPro Domain: IPR008258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000189 Prokaryotic transglycosylase, active site Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01464 Transglycosylase SLT domain Protein Sequence Similarity - PFAM Model Name: PF01464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family CBM50 Carbohydrate-Binding Module Family 50 Protein Sequence Similarity - CAZy Model Name: CBM50
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018392 LysM domain Protein Sequence Similarity - InterPro Domain: IPR018392
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01476 LysM domain Protein Sequence Similarity - PFAM Model Name: PF01476
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.1.- Published Annotation - Swiss-Prot Accession Number: P0AEZ7 Feb 2006
Person Uncurated MultiFun 3.3.1 (regulation; genetic unit regulated; operon) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.2.2 (regulation; type of regulation; transcriptional level; activator) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.2.2 (information transfer; RNA related; transcription related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786405 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000704 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945694 Published Annotation - Entrez Gene Database ID: 945694
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEZ7 Published Annotation - Swiss-Prot Accession Number: P0AEZ7 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEZ7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10246 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function regulator; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly; GO_process: GO:0006350 - transcription Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73316.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0016998 cell wall macromolecule catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002482
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000133 mltD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000407 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001112 mltD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000824 mltD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000205 mltD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000434 mltD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002120 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000871 mltD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003351 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001067 mltD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001476 mltD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005579 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020527 mltD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003224 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298776 mltD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000971 mltD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002723 mltD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000640 mltD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007368 mltD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000221 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006305 mltD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000203 mltD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004091 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009505 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007178 mltD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007251 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076318 mltD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000218 mltD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000323 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005865 mltD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006814 mltD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000223 mltD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004667 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000019 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009466 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007971 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009464 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008271 mltD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005062 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008775 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008792 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009396 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010629 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008101 mltD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009919 mltD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024128 mltD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006450 mltD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004898 mltD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000521 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000244 mltD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000212 mltD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000393 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000402 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000370 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000244 mltD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174423 mltD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000214 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000224 mltD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130092 mltD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003131 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000231 dniR CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000495 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000227 mltD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007745 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000154 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001463 mltD CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000866 mltD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003447 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008549 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004367 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290724 mltD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004005 dniR CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063639 mltD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001929 mltD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004140 mltD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004104 mltD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008252 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138905 mltD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003773 mltD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004482 mltD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002882 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000296 mltD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004561 mltD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000923 dniR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000886 dniR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005898 mltD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004664 mltD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004015 mltD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004615 mltD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006603 mltD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008723 mltD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004656 mltD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006790 mltD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002538 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002509 mltD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003368 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004955 mltD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009238 mltD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004381 mltD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007846 mltD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105891 mltD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084320 mltD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000306 dniR CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091396 mltD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009251 mltD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005595 mltD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009130 mltD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266161 CDS
Person Approved Go view Shigella boydii 227 ADV-0000210 mltD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005603 mltD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005290 mltD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000247 mltD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071146 mltD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086559 mltD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000200 dniR CDS
Person Approved Go view Shigella sonnei 046 ADD-0000240 mltD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002330 VC2237 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006619 mltD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002007 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002779 dniR CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003081 mltD_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002333 mltD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003473 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241017 mltD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006801 mltD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000686 mltD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005136 mltD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002281 mltD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118796 mltD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008488 mltD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004870 mltD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003700 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007583 mltD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005446 mltD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032852 mltD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005565 mltD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003508 mltD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001950 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006022 mltD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005006 mltD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003065 mltD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003685 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001294 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008372 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001410 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20047mutantTn5 InsertionRequest the StrainABE-0000704mltDdniR::Tn5KAN-2 at position 1174 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 227597 to 238955
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000684rrlHrRNAforward225759228662Downstream
ABE-0000686rrfHrRNAforward228756228875Downstream
ABE-0000688aspUtRNAforward228928229004Downstream
ABE-0000692dkgBCDSforward229167229970Downstream
ABE-0000694yafCCDScomplement229967230881Downstream
ABE-0000700yafDCDSforward231122231922Downstream
ABE-0000702yafEpseudogeneforward231961232549Downstream
ABE-0000704mltDCDScomplement232597233955Matches
ABE-0000707gloBCDScomplement234027234782Upstream
ABE-0000713yafSCDSforward234816235538Upstream
ABE-0000717rnhACDScomplement235535236002Upstream
ABE-0000722dnaQCDSforward236067236798Upstream
ABE-0000724aspVtRNAforward236931237007Upstream
ABE-0000727yafTCDSforward237335238120Upstream
ABE-0285173ykfMCDScomplement238257238736Upstream
ABE-0000729yafUpseudogenecomplement238746239102Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.