Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000743 (fadE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000743 showshow history
Names
fadE JW5020 ECK0222 yafH fadF b0221
Product
medium-long-chain fatty acyl-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 240859 243303 2445 815
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000138
EnteroFam0000743: Trusted threshold=2201.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009100 (IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) Apr 2008
Automated Process Approved IPR009075 (IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal) Apr 2008
Automated Process Approved IPR006092 (IPR006092 (DEPRECATED) Acyl-CoA dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR006090 (IPR006090 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type 1) Apr 2008
Automated Process Approved IPR015396 (IPR015396 Acyl-CoA dehydrogenase, C-terminal, bacterial type) Apr 2008
Automated Process Approved IPR013786 (IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal) Apr 2008
Automated Process Approved IPR006091 (IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain) Apr 2008
Automated Process Approved IPR013764 (IPR013764 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal) Apr 2008
Automated Process Approved IPR036250 (IPR036250 Acyl-CoA dehydrogenase-like, C-terminal) Jul 2018
Automated Process Approved PF00441 (PF00441 Acyl-CoA dehydrogenase, C-terminal domain) Jul 2018
Automated Process Approved PF02771 (PF02771 Acyl-CoA dehydrogenase, N-terminal domain) Jul 2018
Automated Process Approved PF09317 (PF09317 Domain of unknown function (DUF1974)) Jul 2018
Automated Process Approved PF02770 (PF02770 Acyl-CoA dehydrogenase, middle domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009075, IPR013786, IPR015396, IPR006091, IPR009100, IPR036250
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015396
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006092
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003995 acyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006092
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadE Experimental - PubMed ID: 12057976
Reference: Escherichia coli 		Aug 2002
Person Approved synonym fadF Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW5020 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yafH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0222 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0221 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product medium-long-chain fatty acyl-CoA dehydrogenase Experimental - PubMed ID: 12057976
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name acyl coenzyme A dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000743: Trusted threshold=2201.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000138
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Protein Sequence Similarity - InterPro Domain: IPR009075
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015396 Acyl-CoA dehydrogenase, C-terminal, bacterial type Protein Sequence Similarity - InterPro Domain: IPR015396
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006092 (DEPRECATED) Acyl-CoA dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR006092
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR036250
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Protein Sequence Similarity - InterPro Domain: IPR006091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013764 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00441 Acyl-CoA dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00441
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09317 Domain of unknown function (DUF1974) Protein Sequence Similarity - PFAM Model Name: PF09317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02771 Acyl-CoA dehydrogenase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006090 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type 1 Protein Sequence Similarity - InterPro Domain: IPR006090
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02770 Acyl-CoA dehydrogenase, middle domain Protein Sequence Similarity - PFAM Model Name: PF02770
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 1.3.8.8 Published Annotation - Swiss-Prot Accession Number: Q47146
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Person Uncurated EC number 1.3.8.7 Published Annotation - Swiss-Prot Accession Number: Q47146
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Automated Process Uncurated EC number 1.3.-.- Published Annotation - Database Name: EC2GO: GO:0016627
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q47146 Published Annotation - Swiss-Prot Accession Number: Q47146 Jan 2006
Automated Process Approved db xref GeneID:949007 Published Annotation - Entrez Gene Database ID: 949007
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0000743 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081702 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13145 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73325.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009075, IPR013786, IPR015396, IPR006091, IPR009100, IPR036250
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006092
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015396
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003995 acyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006092
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266079 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266131 CDS
Member
Person Approved Go view EnteroFams ADX-0000138 fadE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000481 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002124 fadE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001903 fadE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001933 fadE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001376 fadE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003320 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003263 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000891 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003334 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001074 fadE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001495 fadE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005435 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016015 fadE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003332 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001283 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298874 fadE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001008 yafH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002688 fadE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000621 fadE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007385 fadE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000255 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006266 fadE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000235 fadE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004057 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009428 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007139 fadE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005850 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076445 fadE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000317 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000361 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007112 fadE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006777 fadE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000231 fadE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004704 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000061 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009507 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008012 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009506 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008313 fadE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005104 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008733 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008833 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009168 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009439 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009030 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008057 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009955 fadE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024169 fadE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006418 fadE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004932 fadE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000555 fadE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000253 fadE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000223 fadE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000480 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000437 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000387 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000365 fadE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174457 fadE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000250 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000232 fadE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130136 fadE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003194 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000262 fadE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000534 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004084 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000236 fadE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003251 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005432 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000183 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001493 fadE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000218 fadE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004024 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000917 fadE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003397 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008578 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004337 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290678 fadE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004035 yafH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063783 fadE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001984 fadE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000895 fadE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002578 fadE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008436 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139455 fadE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003921 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002839 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000358 fadE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001008 yafH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000999 yafH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002473 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002446 fadE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003307 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004448 fadE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007780 fadE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105986 fadE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084256 fadE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000366 fadE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091531 fadE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000287 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005613 fadE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005259 fadE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071239 fadE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086632 fadE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000320 yafH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000279 fadE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005438 fadE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002652 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009329 yafH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001944 fadE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001811 fadE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000782 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235766 fadE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003282 fadE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000290 fadE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126212 fadE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004127 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030598 fadE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001039 fadE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003445 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007178 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000935 fadE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001093 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003925 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008415 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001419 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22993mutantTn5 InsertionRequest the StrainABE-0000743fadEyafH::Tn5KAN-I-SceI at position 1400 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 235859 to 248303
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000717rnhACDScomplement235535236002Downstream
ABE-0000722dnaQCDSforward236067236798Downstream
ABE-0000724aspVtRNAforward236931237007Downstream
ABE-0000727yafTCDSforward237335238120Downstream
ABE-0285173ykfMCDScomplement238257238736Downstream
ABE-0000729yafUpseudogenecomplement238746239102Downstream
ABE-0285024yafFpseudogeneforward239098239378Downstream
ABE-0000734yafVCDScomplement239419240189Downstream
ABE-0000740ivyCDSforward240343240816Downstream
ABE-0000743fadECDScomplement240859243303Matches
ABE-0000751gmhACDSforward243543244121Upstream
ABE-0285336repeat_regionforward244129244263Upstream
ABE-0000755yafJCDSforward244327245094Upstream
ABE-0000757dpaACDScomplement245065245805Upstream
ABE-0000761yafQCDScomplement245961246239Upstream
ABE-0000764dinJCDScomplement246242246502Upstream
ABE-0000775yafLCDSforward246712247461Upstream
ABE-0285337repeat_regionforward247458247541Upstream
ABE-0000779rayTCDSforward247637248134Upstream
ABE-0285338repeat_regionforward248147248334Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.