Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000751 (gmhA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000751 showshow history
Names
gmhA yafI tfrA isn JW0212 ECK0223 lpcA b0222
Product
D-sedoheptulose 7-phosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 243543 244121 579 193
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000139
EnteroFam0000751: Trusted threshold=557.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR004515 (IPR004515 Phosphoheptose isomerase) Apr 2008
Automated Process Approved IPR001347 (IPR001347 Sugar isomerase (SIS)) Apr 2008
Automated Process Approved PF13580 (PF13580 SIS domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008968 D-sedoheptulose 7-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gmhA Published Sequence Analysis - PubMed ID: 8655517
Reference: Escherichia coli K-12 W3110
Jun 2006
Person Approved synonym JW0212 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym isn Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym yafI Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym tfrA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym ECK0223 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym lpcA Experimental - PubMed ID: 8631969
Reference: Escherichia coli
Aug 2002
Person Approved locus tag b0222 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-sedoheptulose 7-phosphate isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoheptose isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000751: Trusted threshold=557.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000139
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF13580 SIS domain Protein Sequence Similarity - PFAM Model Name: PF13580
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR004515 Phosphoheptose isomerase Protein Sequence Similarity - InterPro Domain: IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR001347 Sugar isomerase (SIS) Protein Sequence Similarity - InterPro Domain: IPR001347
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 5.3.1.- Published Annotation - Swiss-Prot Accession Number: P63224 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786416 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0000751 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13146 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P63224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:949134 Published Annotation - Entrez Gene Database ID: 949134
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P63224 Published Annotation - Swiss-Prot Accession Number: P63224 Jan 2006
Person Approved function enzyme; Surface polysaccharides & antigens Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note phosphoheptose isomerase; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73326.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008968 D-sedoheptulose 7-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000139 gmhA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000480 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000453 lpcA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000363 lpcA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000554 lpcA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000942 gmhA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003321 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003262 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129520 lpcA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104361 lpcA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000892 gmhA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003333 gmhA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001075 gmhA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001496 gmhA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005437 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016017 lpcA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003331 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001284 gmhA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298879 gmhA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001009 gmhA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002687 gmhA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000620 gmhA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007386 gmhA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000256 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006265 gmhA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000236 lpcA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004056 gmhA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009427 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007138 gmhA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005849 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076446 lpcA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000318 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000362 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007111 gmhA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006776 gmhA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000232 lpcA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004705 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000062 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009508 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008013 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009507 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008314 gmhA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005105 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008732 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008834 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009169 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009440 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009031 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008056 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009956 gmhA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024170 lpcA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006417 gmhA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004933 gmhA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000556 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000254 lpcA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000224 lpcA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000479 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000438 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000388 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000366 gmhA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174458 gmhA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000251 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000233 gmhA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130137 lpcA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003195 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000263 lpcA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000535 gmhA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004083 gmhA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000237 lpcA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003252 gmhA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005433 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000184 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001495 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000219 gmhA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004022 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000918 gmhA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003396 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008579 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004336 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290677 lpcA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004036 gmhA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063782 gmhA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002002 lpcA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002067 lpcA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002577 gmhA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008435 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139459 lcpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004522 gmhA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002838 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000359 gmhA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004618 gmhA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001014 ghmA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001005 ghmA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005834 gmhA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004717 gmhA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004070 gmhA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004631 gmhA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006669 gmhA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008787 gmhA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004720 gmhA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006855 gmhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002472 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002445 gmhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003306 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005009 gmhA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008187 gmhA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004449 gmhA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007779 gmhA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105988 gmhA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084255 gmhA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000367 gmhA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091535 gmhA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009193 gmhA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005531 gmhA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007492 gmhA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000289 gmhA CDS
Person Approved Go view Shigella boydii 227 ADV-0000225 lpcA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005614 gmhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005258 gmhA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000268 gmhA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071240 gmhA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086633 gmhA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000319 gmhA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000280 lpcA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002323 VC2230 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005435 lpcA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002651 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009327 gmhA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001943 gmhA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001812 gmhA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000783 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235769 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007442 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003281 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007015 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004274 gmhA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126210 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007408 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006815 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004126 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005201 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004415 gmhA1 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030599 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007518 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001040 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003444 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005062 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007177 gmhA1 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000936 gmhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001094 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003924 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008420 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001420 gmhA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 238543 to 249121
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285173ykfMCDScomplement238257238736Upstream
ABE-0000729yafUpseudogenecomplement238746239102Upstream
ABE-0285024yafFpseudogeneforward239098239378Upstream
ABE-0000734yafVCDScomplement239419240189Upstream
ABE-0000740ivyCDSforward240343240816Upstream
ABE-0000743fadECDScomplement240859243303Upstream
ABE-0000751gmhACDSforward243543244121Matches
ABE-0285336repeat_regionforward244129244263Downstream
ABE-0000755yafJCDSforward244327245094Downstream
ABE-0000757dpaACDScomplement245065245805Downstream
ABE-0000761yafQCDScomplement245961246239Downstream
ABE-0000764dinJCDScomplement246242246502Downstream
ABE-0000775yafLCDSforward246712247461Downstream
ABE-0285337repeat_regionforward247458247541Downstream
ABE-0000779rayTCDSforward247637248134Downstream
ABE-0285338repeat_regionforward248147248334Downstream
ABE-0000782lfhApseudogenecomplement248358250061Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.