Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000809 (pepD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000809 showshow history
Names
pepD pepH JW0227 ECK0238 b0237
Product
aminoacyl-histidine dipeptidase (peptidase D)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 254259 255716 1458 486
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000143
EnteroFam0000809: Trusted threshold=1073.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001160 (IPR001160 Peptidase M20C, Xaa-His dipeptidase) Apr 2008
Automated Process Approved IPR002933 (IPR002933 Peptidase M20) Apr 2008
Automated Process Approved IPR011650 (IPR011650 Peptidase M20, dimerisation domain) Apr 2008
Automated Process Approved PF07687 (PF07687 Peptidase dimerisation domain) Jul 2018
Automated Process Approved PF01546 (PF01546 Peptidase family M20/M25/M40) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008769 (OBSOLETE) X-His dipeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pepD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0227 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pepH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0238 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0237 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aminoacyl-histidine dipeptidase (peptidase D) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name aminopeptidase D (aminoacyl-histidine dipeptidase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name aminoacyl-histidine dipeptidase (peptidase D) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000809: Trusted threshold=1073.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000143
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002933 Peptidase M20 Protein Sequence Similarity - InterPro Domain: IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01546 Peptidase family M20/M25/M40 Protein Sequence Similarity - PFAM Model Name: PF01546
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001160 Peptidase M20C, Xaa-His dipeptidase Protein Sequence Similarity - InterPro Domain: IPR001160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07687 Peptidase dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF07687
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011650 Peptidase M20, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 3.4.13.18 Published Annotation - Swiss-Prot Accession Number: P15288
Reference: Escherichia coli K-12 		Dec 2011
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10695 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945013 Published Annotation - Entrez Gene Database ID: 945013
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P15288 Published Annotation - Swiss-Prot Accession Number: P15288 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15288 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786432 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000809 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of proteins, peptides, glyco Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73341.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008769 (OBSOLETE) X-His dipeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001160
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000143 pepD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000476 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001152 pepD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001145 pepD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001492 pepD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001029 pepD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003325 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003257 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000903 pepD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003329 pepD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001083 pepD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001541 pepD_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005442 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016023 pepD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003327 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001298 pepD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298887 pepD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001013 pepD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002683 pepD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000581 pepD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007405 pepD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000270 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006208 pepD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000252 pepD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004042 pepD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009363 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007124 pepD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005836 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076457 pepD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000333 pepD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000418 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007096 pepD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006763 pepD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000243 pepD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004720 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000080 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009524 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008029 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009524 pepD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005121 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008716 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008850 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009185 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009456 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009047 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008040 pepD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009972 pepD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024185 pepD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006403 pepD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004947 pepD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000568 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000266 pepD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000239 pepD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000464 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000450 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000403 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000377 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174472 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000265 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000290 pepD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130152 pepD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003213 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000278 pepD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000540 pepD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004071 pepD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000250 pepD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003265 pepD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005438 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000191 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001502 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000229 pepD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004010 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000928 pepD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003387 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008587 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004327 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290663 pepD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004043 pepD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063776 pepD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002933 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002570 pepD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008428 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139559 pepD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004528 pepD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002831 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000367 pepD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004624 pepD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001029 pepD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001019 pepD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005828 pepD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004723 pepD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004076 pepD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004637 pepD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006675 pepD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008793 pepD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004726 pepD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006861 pepD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002466 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002439 pepD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003300 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005015 pepD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008181 pepD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004455 pepD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007773 pepD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0105999 pepD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084249 pepD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000373 pepD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091550 pepD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009187 pepD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005525 pepD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007499 pepD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000302 pepD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264670 pepD CDS
Person Approved Go view Shigella boydii 227 ADV-0000264 pepD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005630 pepD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005057 pepD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000537 pepD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071256 pepD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086645 pepD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000306 pepD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000297 pepD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002372 VC2279 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002190 pepD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002638 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009281 pepD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001926 pepD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001826 pepD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000796 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235807 pepD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007429 pepD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003262 pepD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007002 pepD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000303 pepD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126169 pepD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007421 pepD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006803 pepD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004112 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005189 pepD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004429 pepD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030612 pepD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007531 pepD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001058 pepD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003425 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005074 pepD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007163 pepD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000949 pepD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001112 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003906 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008461 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001433 pepD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 249259 to 260716
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000782lfhApseudogenecomplement248358250061Downstream
ABE-0000785lafUpseudogeneforward250059250827Downstream
ABE-0000789dinBCDSforward250898251953Downstream
ABE-0000793yafNCDSforward252005252298Downstream
ABE-0000795yafOCDSforward252301252699Downstream
ABE-0000801yafPCDSforward252709253161Downstream
ABE-0000805ykfJpseudogeneforward253479253685Downstream
ABE-0000807prfHpseudogeneforward253679254202Downstream
ABE-0285339repeat_regionforward254217254244Downstream
ABE-0000809pepDCDScomplement254259255716Matches
ABE-0000814gptCDSforward255977256435Upstream
ABE-0000817frsACDSforward256527257771Upstream
ABE-0000821crlpseudogeneforward257829257907(Interval #1) Upstream
ABE-0285312is_elementcomplement257908258675Upstream
ABE-0285340mobile_elementforward257908258675Upstream
ABE-0285313insB9CDScomplement257923258426Upstream
ABE-0285314insA9CDScomplement258345258620Upstream
ABE-0000821crlpseudogeneforward258684259006(Interval #2) Upstream
ABE-0285341repeat_regionforward259016259036Upstream
ABE-0000823phoECDScomplement259045260100Upstream
ABE-0000830proBCDSforward260388261491Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.