Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000823 (phoE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000823 showshow history
Names
phoE JW0231 ECK0242 ompE b0241
Product
outer membrane phosphoporin protein E
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 259045 260100 1056 352
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Apr 2008
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Apr 2008
Automated Process Approved IPR013793 (IPR013793 Porin, Gram-negative type, conserved site) Apr 2008
Automated Process Approved PF00267 (PF00267 Gram-negative porin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phoE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0242 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0231 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ompE Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0241 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product outer membrane phosphoporin protein E Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name outer membrane pore protein E (E,Ic,NmpAB) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013793 Porin, Gram-negative type, conserved site Protein Sequence Similarity - InterPro Domain: IPR013793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00267 Gram-negative porin Protein Sequence Similarity - PFAM Model Name: PF00267
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B.1 (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily); The General Bacterial Porin (GBP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.92 (transport; substrate; hydrophilic molecules) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10729 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000823 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P02932 Published Annotation - Swiss-Prot Accession Number: P02932 Jan 2005
Automated Process Approved db xref GeneID:944926 Published Annotation - Entrez Gene Database ID: 944926
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786436 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02932 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function membrane; Outer membrane constituents Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note outer membrane pore protein E (E,Ic,NmpAB); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73345.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015288 porin activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000433 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000029 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002074 phoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002149 phoE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002303 phoE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002238 phoE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000907 phoE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003325 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001087 phoE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001545 phoE CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0000952 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298899 ompN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001018 omp39 CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002679 phoE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000585 phoE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007409 phoE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000274 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006204 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000256 phoE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004038 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009358 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007120 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005832 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076462 phoE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000337 phoE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000422 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007092 phoE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006759 phoE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000247 phoE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004724 phoE CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0000085 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009528 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008033 phoE CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0009528 phoE CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0008336 phoE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005125 phoE CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0008712 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008854 phoE CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0009189 phoE CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0009460 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009051 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008036 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009976 phoE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024189 phoE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006399 phoE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004951 phoE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000572 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000270 phoE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000243 phoE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000460 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000454 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000407 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000382 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174476 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000269 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000294 phoE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130156 phoE CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0003218 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000283 phoE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000899 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002680 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000283 phoE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003269 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000195 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001507 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000233 phoE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004005 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000932 phoE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003383 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008591 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004323 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290659 phoE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004047 phoE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004532 CDS
Person Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002827 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000371 phoE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004628 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001039 phoE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005824 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004727 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004080 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004641 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006679 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008797 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004730 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006865 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002462 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002435 phoE CDS
Person Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003296 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0005019 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008176 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004459 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007769 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106007 phoE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084245 phoE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000377 phoE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091562 phoE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009183 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005521 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007503 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002926 CDS
Person Approved Go view Shigella boydii 227 ADV-0000268 phoE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005634 phoE CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0005053 phoE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071260 phoE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086649 phoE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000302 phoE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000301 phoE CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008476 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001437 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 254045 to 265100
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000807prfHpseudogeneforward253679254202Downstream
ABE-0285339repeat_regionforward254217254244Downstream
ABE-0000809pepDCDScomplement254259255716Downstream
ABE-0000814gptCDSforward255977256435Downstream
ABE-0000817frsACDSforward256527257771Downstream
ABE-0000821crlpseudogeneforward257829257907(Interval #1) Downstream
ABE-0285312is_elementcomplement257908258675Downstream
ABE-0285340mobile_elementforward257908258675Downstream
ABE-0285313insB9CDScomplement257923258426Downstream
ABE-0285314insA9CDScomplement258345258620Downstream
ABE-0000821crlpseudogeneforward258684259006(Interval #2) Downstream
ABE-0285341repeat_regionforward259016259036Downstream
ABE-0000823phoECDScomplement259045260100Matches
ABE-0000830proBCDSforward260388261491Upstream
ABE-0000832proACDSforward261503262756Upstream
ABE-0000834thrWtRNAforward262871262946Upstream
ABE-0234205CP4-6prophageforward262958297265Upstream
ABE-0285342misc_featureforward262958297265Upstream
ABE-0285232ykfNpseudogenecomplement263149263212Upstream
ABE-0000836ykfICDScomplement263328263669Upstream
ABE-0000838yafWCDScomplement263690264007Upstream
ABE-0285025ykfHCDScomplement264026264247Upstream
ABE-0000841ykfGCDScomplement264256264732Upstream
ABE-0000843yafXCDScomplement264748265206Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.