Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000830 (proB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000830 showshow history
Names
proB pro JW0232 ECK0243 pro2 b0242
Product
gamma-glutamate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 260388 261491 1104 368
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000147
EnteroFam0000830: Trusted threshold=1045.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005715 (IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase) Apr 2008
Automated Process Approved IPR002478 (IPR002478 PUA domain) Apr 2008
Automated Process Approved IPR001057 (IPR001057 Glutamate/acetylglutamate kinase) Apr 2008
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR011529 (IPR011529 Glutamate 5-kinase) Apr 2008
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved IPR015947 (IPR015947 PUA-like superfamily) Jul 2018
Automated Process Approved PF01472 (PF01472 PUA domain) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004349 glutamate 5-kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name proB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0232 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pro Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0243 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pro2 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0242 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product gamma-glutamate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name gamma-glutamate kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000830: Trusted threshold=1045.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000147
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002478 PUA domain Protein Sequence Similarity - InterPro Domain: IPR002478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase Protein Sequence Similarity - InterPro Domain: IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01472 PUA domain Protein Sequence Similarity - PFAM Model Name: PF01472
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015947 PUA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR015947
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001057 Glutamate/acetylglutamate kinase Protein Sequence Similarity - InterPro Domain: IPR001057
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011529 Glutamate 5-kinase Protein Sequence Similarity - InterPro Domain: IPR011529
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.2.11 Published Annotation - Swiss-Prot Accession Number: P0A7B5 Feb 2006
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7B5 Published Annotation - Swiss-Prot Accession Number: P0A7B5 Jan 2006
Automated Process Approved db xref GI:1786437 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946425 Published Annotation - Entrez Gene Database ID: 946425
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0000830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7B5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10768 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Proline Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006561 - proline biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73346.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002478
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004349 glutamate 5-kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005715
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000147 proB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000472 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000757 proB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000903 proB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001490 proB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001025 proB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003329 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003245 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000909 proB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003324 proB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001088 proB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001546 proB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005447 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016031 proB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003321 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001303 proB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298903 proB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001019 proB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002678 proB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000587 proB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007410 proB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000275 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006203 proB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000257 proB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004037 proB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009357 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007116 proB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005831 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076463 proB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000338 proB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000423 proB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007091 proB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006758 proB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000248 proB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004725 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000087 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009529 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008034 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009529 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008337 proB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005126 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008711 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008855 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009190 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009461 proB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009052 proB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008035 proB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009977 proB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024190 proB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006398 proB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004952 proB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000573 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000271 proB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000244 proB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000459 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000455 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000408 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000383 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174477 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000270 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000295 proB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130157 proB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003220 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000284 proB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000544 proB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004067 proB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000282 proB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003270 proB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005446 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000196 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001508 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000234 proB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004004 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000933 proB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003382 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008592 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004322 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290658 proB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004048 proB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063772 proB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001992 proB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000889 proB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002562 proB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008422 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139563 proB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000818 proB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004534 proB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002826 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000374 proB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004631 proB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001043 proB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001031 proB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005822 proB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004729 proB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004083 proB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004643 proB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006681 proB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008799 proB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004733 proB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006867 proB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002461 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002434 proB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003293 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005021 proB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008174 proB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004461 proB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007767 proB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106010 proB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084244 proB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000379 proB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091571 proB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009181 proB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005519 proB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007506 proB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000306 proB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264676 proB CDS
Person Approved Go view Shigella boydii 227 ADV-0000269 proB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005635 proB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005052 proB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000530 proB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071264 proB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086652 proB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000298 proB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000302 proB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002367 VC2274 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002198 proB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002634 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009272 proB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001922 proB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001830 proB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000800 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235819 proB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007423 proB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003256 proB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006994 proB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000311 proB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126149 proB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007428 proB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006797 proB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001546 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005183 proB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004435 proB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030618 proB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007538 proB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001064 proB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003419 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005080 proB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007157 proB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000956 proB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001119 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003899 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008480 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001438 proB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 255388 to 266491
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000809pepDCDScomplement254259255716Upstream
ABE-0000814gptCDSforward255977256435Upstream
ABE-0000817frsACDSforward256527257771Upstream
ABE-0000821crlpseudogeneforward257829257907(Interval #1) Upstream
ABE-0285312is_elementcomplement257908258675Upstream
ABE-0285340mobile_elementforward257908258675Upstream
ABE-0285313insB9CDScomplement257923258426Upstream
ABE-0285314insA9CDScomplement258345258620Upstream
ABE-0000821crlpseudogeneforward258684259006(Interval #2) Upstream
ABE-0285341repeat_regionforward259016259036Upstream
ABE-0000823phoECDScomplement259045260100Upstream
ABE-0000830proBCDSforward260388261491Matches
ABE-0000832proACDSforward261503262756Downstream
ABE-0000834thrWtRNAforward262871262946Downstream
ABE-0234205CP4-6prophageforward262958297265Downstream
ABE-0285342misc_featureforward262958297265Downstream
ABE-0285232ykfNpseudogenecomplement263149263212Downstream
ABE-0000836ykfICDScomplement263328263669Downstream
ABE-0000838yafWCDScomplement263690264007Downstream
ABE-0285025ykfHCDScomplement264026264247Downstream
ABE-0000841ykfGCDScomplement264256264732Downstream
ABE-0000843yafXCDScomplement264748265206Downstream
ABE-0000846ykfFCDScomplement265304265543Downstream
ABE-0000851ykfBCDScomplement265620266087Downstream
ABE-0000853yafYCDScomplement266110266553Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.