Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0000832 (proA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0000832 showshow history
Names
proA pro JW0233 ECK0244 pro1 b0243
Product
gamma-glutamylphosphate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 261503 262756 1254 418
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000148
EnteroFam0000832: Trusted threshold=1069.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000965 (IPR000965 GPR domain) Apr 2008
Automated Process Approved IPR012134 (IPR012134 Glutamate-5-semialdehyde dehydrogenase) Apr 2008
Automated Process Approved IPR015590 (IPR015590 Aldehyde dehydrogenase domain) Jul 2018
Automated Process Approved IPR016161 (IPR016161 Aldehyde/histidinol dehydrogenase) Jul 2018
Automated Process Approved PF00171 (PF00171 Aldehyde dehydrogenase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR000965, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000965
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012134
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004350 glutamate-5-semialdehyde dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000965
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name proA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0233 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pro Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0244 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pro1 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0243 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product gamma-glutamylphosphate reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name gamma-glutamylphosphate reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0000832: Trusted threshold=1069.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000148
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR016161 Aldehyde/histidinol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000965 GPR domain Protein Sequence Similarity - InterPro Domain: IPR000965
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015590 Aldehyde dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR015590
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00171 Aldehyde dehydrogenase family Protein Sequence Similarity - PFAM Model Name: PF00171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012134 Glutamate-5-semialdehyde dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR012134
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.2.1.41 Published Annotation - Swiss-Prot Accession Number: P07004 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.4 (metabolism; building block biosynthesis; amino acids; proline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10767 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0000832 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07004 Published Annotation - Swiss-Prot Accession Number: P07004 Jan 2005
Automated Process Approved db xref GI:1786438 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946680 Published Annotation - Entrez Gene Database ID: 946680
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07004 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Proline Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006561 - proline biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73347.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006561 proline biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000965
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR000965, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004350 glutamate-5-semialdehyde dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000965
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012134
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000148 proA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000471 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000756 proA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000864 proA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001430 proA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001023 proA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003330 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003244 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003323 proA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001089 proA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001547 proA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005448 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016032 proA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003320 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001304 proA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0298907 proA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001020 proA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002677 proA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000588 proA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007411 proA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000276 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006202 proA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000258 proA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004036 proA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009356 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007115 proA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005830 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076464 proA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000339 proA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000424 proA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007090 proA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006757 proA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000249 proA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004726 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000088 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009530 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008035 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009530 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008338 proA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005127 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008710 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008856 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009191 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009462 proA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009053 proA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008034 proA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009978 proA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024191 proA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006397 proA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004953 proA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000574 proA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000272 proA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000245 proA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000458 proA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000456 proA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000409 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000384 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174478 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000271 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000296 proA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130158 proA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003221 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000285 proA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000545 proA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004066 proA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000281 proA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003271 proA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005447 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000197 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001509 proA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000235 proA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004003 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000934 proA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003381 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008593 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004321 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290657 proA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004049 proA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063771 proA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001993 proA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000888 proA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002561 proA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008421 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139566 proA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004905 proA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004535 proA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002825 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000375 proA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004632 proA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001047 proA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001035 proA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005821 proA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004730 proA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004084 proA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004644 proA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006682 proA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008800 proA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004734 proA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006868 proA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002460 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002433 proA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003292 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005022 proA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008173 proA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004462 proA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007766 proA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106015 proA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084243 proA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000380 proA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091574 proA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009180 proA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005518 proA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007507 proA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000307 proA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264677 proA CDS
Person Approved Go view Shigella boydii 227 ADV-0000270 proA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005636 proA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005051 proA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000529 proA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071265 proA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086653 proA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000297 proA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000303 proA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002366 VC2273 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002200 proA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002633 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009269 proA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001921 proA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001831 proA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000801 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235820 proA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007422 proA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003255 proA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006993 proA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000312 proA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126146 proA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007429 proA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006796 proA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001545 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005182 proA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004436 proA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030619 proA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007539 proA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001065 proA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003418 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005081 proA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007156 proA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000957 proA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001120 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003898 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008488 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001439 proA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20067mutantTn5 InsertionRequest the StrainABE-0000832proAproA::Tn5KAN-2 at position 192 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 256503 to 267756
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0000817frsACDSforward256527257771Upstream
ABE-0000821crlpseudogeneforward257829257907(Interval #1) Upstream
ABE-0285312is_elementcomplement257908258675Upstream
ABE-0285340mobile_elementforward257908258675Upstream
ABE-0285313insB9CDScomplement257923258426Upstream
ABE-0285314insA9CDScomplement258345258620Upstream
ABE-0000821crlpseudogeneforward258684259006(Interval #2) Upstream
ABE-0285341repeat_regionforward259016259036Upstream
ABE-0000823phoECDScomplement259045260100Upstream
ABE-0000830proBCDSforward260388261491Upstream
ABE-0000832proACDSforward261503262756Matches
ABE-0000834thrWtRNAforward262871262946Downstream
ABE-0234205CP4-6prophageforward262958297265Downstream
ABE-0285342misc_featureforward262958297265Downstream
ABE-0285232ykfNpseudogenecomplement263149263212Downstream
ABE-0000836ykfICDScomplement263328263669Downstream
ABE-0000838yafWCDScomplement263690264007Downstream
ABE-0285025ykfHCDScomplement264026264247Downstream
ABE-0000841ykfGCDScomplement264256264732Downstream
ABE-0000843yafXCDScomplement264748265206Downstream
ABE-0000846ykfFCDScomplement265304265543Downstream
ABE-0000851ykfBCDScomplement265620266087Downstream
ABE-0000853yafYCDScomplement266110266553Downstream
ABE-0285119ykfLpseudogenecomplement266553266781Downstream
ABE-0285118ykfKpseudogenecomplement266775266967Downstream
ABE-0000856yafZCDScomplement267184268005Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.