Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001080 (betT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001080 showshow history
Names
betT JW0306 ECK0312 b0314
Product
choline:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 329463 331496 2034 678
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000060 (IPR000060 BCCT transporter family) Apr 2008
Automated Process Approved PF02028 (PF02028 BCCT, betaine/carnitine/choline family transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006578 amino-acid betaine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name betT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0312 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0306 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0314 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product choline:H+ symporter Published Annotation - EcoCyc Accession Number: EG10112
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name high-affinity choline transport protein (BCCT family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name choline transporter of high affinity Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name high-affinity choline transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF02028 BCCT, betaine/carnitine/choline family transporter Protein Sequence Similarity - PFAM Model Name: PF02028
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000060 BCCT transporter family Protein Sequence Similarity - InterPro Domain: IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.18 (metabolism; central intermediary metabolism; betaine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.15 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Betaine/Carnitine/Choline Transporter (BCCT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.33 (transport; substrate; choline) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001080 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10112 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABC9 Published Annotation - Swiss-Prot Accession Number: P0ABC9 Jan 2006
Automated Process Approved db xref GeneID:945079 Published Annotation - Entrez Gene Database ID: 945079
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786506 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABC9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Other Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity choline transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006578 - betaine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73417.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006578 amino-acid betaine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003451 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002418 betT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002250 betT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000064 betT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001844 betT CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001969 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001392 betP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0307307 betT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000060 betT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000809 betT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007460 betT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000394 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000309 betT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003995 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009320 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007080 betT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005797 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076510 betT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000370 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000457 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007066 betT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008089 betT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000295 betT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004781 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003871 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010548 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008131 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009208 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007303 betT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005215 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007986 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008947 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007838 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009110 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007552 betT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007468 betT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008911 betT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024289 betT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008746 betT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005055 betT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000643 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000338 betT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000318 betT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000511 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000591 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000448 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000432 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174521 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000344 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000344 betT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130251 betT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004922 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000344 betT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000946 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000589 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001546 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003467 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001509 betT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002561 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002231 betT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001981 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001631 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005375 betT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062001 betT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000979 betT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001645 betT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007558 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005347 betT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004296 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000339 betT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001351 VC1279 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002181 betT CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236558 betT1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001306 betT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005233 betT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004522 betT CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119083 betT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008073 betT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004774 betT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003408 betT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003041 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006316 betT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006818 betT CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001266 betT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001508 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003464 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 324463 to 336496
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001066ykgHCDScomplement324696325364Upstream
ABE-0001070betACDScomplement325577327247Upstream
ABE-0001072betBCDScomplement327261328733Upstream
ABE-0001076betICDScomplement328747329334Upstream
ABE-0001080betTCDSforward329463331496Matches
ABE-0285783yahVCDSforward331802331876Downstream
ABE-0001086pdeLCDSforward332371333459Downstream
ABE-0001088yahBCDScomplement333501334433Downstream
ABE-0001091yahCCDScomplement334525335022Downstream
ABE-0001095yahDCDSforward335280335885Downstream
ABE-0001097yahECDSforward335925336788Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.