Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001173 (cynS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001173 showshow history
Names
cynS cnt JW0331 ECK0337 b0340
Product
cyanate aminohydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 359489 359959 471 157
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008076 (IPR008076 Cyanate hydratase) Apr 2008
Automated Process Approved IPR010982 (IPR010982 Lambda repressor-like, DNA-binding domain superfamily) Apr 2008
Automated Process Approved IPR003712 (IPR003712 Cyanate lyase, C-terminal) Apr 2008
Automated Process Approved IPR036581 (IPR036581 Cyanate lyase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF02560 (PF02560 Cyanate lyase C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009439 cyanate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003712
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009440 cyanate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008076
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010982
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008076
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008824 cyanate hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003712
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cynS Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved synonym cnt Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW0331 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0337 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0340 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cyanate aminohydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name cyanate aminohydrolase, cyanase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name cyanate aminohydrolase (cyanase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR036581 Cyanate lyase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036581
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR010982 Lambda repressor-like, DNA-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR010982
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003712 Cyanate lyase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR003712
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF02560 Cyanate lyase C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02560
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR008076 Cyanate hydratase Protein Sequence Similarity - InterPro Domain: IPR008076
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 4.2.1.104 Published Annotation - Swiss-Prot Accession Number: P00816 Feb 2006
Person Uncurated MultiFun 1.7.24 (metabolism; central intermediary metabolism; cyanate catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10175 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948998 Published Annotation - Entrez Gene Database ID: 948998
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P00816 Published Annotation - Swiss-Prot Accession Number: P00816 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00816 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786535 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0001173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note cyanate aminohydrolase, cyanase; GO_process: GO:0009440 - cyanate catabolic process; GO_process: GO:0006807 - nitrogen compound metabolic process; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73443.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009439 cyanate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003712
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008076
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009440 cyanate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008824 cyanate hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003712
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010982
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008076
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005993 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004408 cynS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004938 cynS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003801 cynS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003866 cynS CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003214 cynS CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019984 cynS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007488 cynS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009292 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007044 cynS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005763 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000400 cynS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000490 cynS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008055 cynS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004815 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003909 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010585 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008167 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009245 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007337 cynS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005252 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007951 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008983 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007874 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009147 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007589 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007433 cynS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008947 cynS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024327 cynS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005087 cynS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000345 cynS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000343 cynS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000612 cynS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000564 cynS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000475 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000374 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000370 cynS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130284 cynS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004959 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002956 cynS CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137020 cynS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001968 cynS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004273 cynS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007548 cynS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003798 cynS CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017513 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002890 cynS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 354489 to 364959
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001154prpECDSforward352706354592Upstream
ABE-0285349repeat_regionforward354599354769Upstream
ABE-0001159codBCDSforward354922356181Upstream
ABE-0001161codACDSforward356171357454Upstream
ABE-0285350repeat_regionforward357484357562Upstream
ABE-0285351repeat_regionforward357684357762Upstream
ABE-0001165cynRCDScomplement357791358690Upstream
ABE-0001171cynTCDSforward358799359458Upstream
ABE-0001173cynSCDSforward359489359959Matches
ABE-0001175cynXCDSforward359992361146Downstream
ABE-0285352repeat_regionforward361208361236Downstream
ABE-0001177lacACDScomplement361249361860Downstream
ABE-0285353repeat_regionforward361883361916Downstream
ABE-0001181lacYCDScomplement361926363179Downstream
ABE-0001183lacZCDScomplement363231366305Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.