Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001175 (cynX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001175 showshow history
Names
cynX JW0332 ECK0338 b0341
Product
cyanate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 359992 361146 1155 385
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR004747 (IPR004747 Cyanate transport system protein) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009440 cyanate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cynX Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW0332 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0338 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0341 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cyanate transporter Published Annotation - EcoCyc Accession Number: EG10177
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Uncurated alternate product name cyanate transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cyanate transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Approved alternate product name predicted cyanate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR004747 Cyanate transport system protein Protein Sequence Similarity - InterPro Domain: IPR004747
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.38 (transport; substrate; cyanate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.24 (metabolism; central intermediary metabolism; cyanate catabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946770 Published Annotation - Entrez Gene Database ID: 946770
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P17583 Published Annotation - Swiss-Prot Accession Number: P17583 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17583 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10177 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0001175 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note cyanate transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009440 - cyanate catabolic process; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73444.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009440 cyanate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002390 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003699 cynX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003264 cynX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003093 cynX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003347 cynX CDS
Ortholog
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007353 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018298 cynX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001649 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007489 cynX CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009290 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007043 cynX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005762 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000491 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008054 cynX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004816 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003910 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010586 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008168 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009246 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007338 cynX CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005253 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007950 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008984 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007875 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009148 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007590 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007432 cynX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008948 cynX CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024328 cynX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005088 cynX CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000346 cynX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000344 cynX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000611 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000474 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000376 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000371 cynX CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130285 cynX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004960 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000637 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002743 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007199 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063036 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001626 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001901 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004481 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006383 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000871 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003799 yeaN CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017518 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002889 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 354992 to 366146
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001159codBCDSforward354922356181Upstream
ABE-0001161codACDSforward356171357454Upstream
ABE-0285350repeat_regionforward357484357562Upstream
ABE-0285351repeat_regionforward357684357762Upstream
ABE-0001165cynRCDScomplement357791358690Upstream
ABE-0001171cynTCDSforward358799359458Upstream
ABE-0001173cynSCDSforward359489359959Upstream
ABE-0001175cynXCDSforward359992361146Matches
ABE-0285352repeat_regionforward361208361236Downstream
ABE-0001177lacACDScomplement361249361860Downstream
ABE-0285353repeat_regionforward361883361916Downstream
ABE-0001181lacYCDScomplement361926363179Downstream
ABE-0001183lacZCDScomplement363231366305Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.