Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001198 (mhpB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001198 showshow history
Names
mhpB JW0339 ECK0345 b0348
Product
2,3-dihydroxyphenylpropionate 1,2-dioxygenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 370277 371221 945 315
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004183 (IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B) Apr 2008
Automated Process Approved PF02900 (PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008198 ferrous iron binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mhpB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0339 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0345 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0348 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2,3-dihydroxyphenylpropionate 1,2-dioxygenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 2,3-dihydroxyphenylpropionate 1,2-dioxygenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Protein Sequence Similarity - PFAM Model Name: PF02900
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B Protein Sequence Similarity - InterPro Domain: IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.13.11.- Published Annotation - Swiss-Prot Accession Number: P0ABR9 Feb 2006
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG20274 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABR9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABR9 Published Annotation - Swiss-Prot Accession Number: P0ABR9 Jan 2006
Automated Process Approved db xref GeneID:945047 Published Annotation - Entrez Gene Database ID: 945047
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786544 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73451.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.46
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008198 ferrous iron binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004519 mhpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004873 mhpB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007866 mhpB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003827 mhpB CDS
Ortholog
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001633 mhpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008205 mhpB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006167 mhpB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009283 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010223 mhpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009969 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000408 mhpB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000497 mhpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008979 mhpB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004822 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000376 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010595 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008177 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010781 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007909 mhpB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005262 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010474 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008993 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007884 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007712 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007078 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010314 mhpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010750 mhpB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024338 mhpB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005094 mhpB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000352 mhpB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000351 mhpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000604 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000555 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000466 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000382 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000378 mhpB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130294 mhpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004969 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002127 mhpB CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141877 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000317 mhpB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 365277 to 376221
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001183lacZCDScomplement363231366305Upstream
ABE-0001189lacICDScomplement366428367510Upstream
ABE-0001191mhpRCDScomplement367587368420Upstream
ABE-0001196mhpACDSforward368611370275Upstream
ABE-0001198mhpBCDSforward370277371221Matches
ABE-0001201mhpCCDSforward371239372105Downstream
ABE-0001205mhpDCDSforward372115372924Downstream
ABE-0001207mhpFCDSforward372921373871Downstream
ABE-0001209mhpECDSforward373868374881Downstream
ABE-0285354repeat_regionforward374930375365Downstream
ABE-0001213mhpTCDSforward375459376670Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.