Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001213 (mhpT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001213 showshow history
Names
mhpT yaiK JW5046 ECK0350 b0353
Product
3-hydroxyphenylpropionate/3-hydroxycinnamate:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 375459 376670 1212 404
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR004746 (IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family) Apr 2008
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mhpT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5046 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yaiK Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0350 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0353 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 3-hydroxyphenylpropionate/3-hydroxycinnamate:H+ symporter Published Annotation - EcoCyc Accession Number: G6206
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name putative 3-hydroxyphenylpropionic transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted 3-hydroxyphenylpropionic transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family Protein Sequence Similarity - InterPro Domain: IPR004746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.3 (transport; substrate; 3-hydroxyphenylpropionic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77589 Published Annotation - Swiss-Prot Accession Number: P77589 Jan 2005
Automated Process Approved db xref GeneID:944997 Published Annotation - Entrez Gene Database ID: 944997
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77589 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081723 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13293 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001213 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73456.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003665 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004421 mhpT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004812 mhpT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003943 mhpT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003808 mhpT CDS
Ortholog
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001638 pcaK_2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008200 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006162 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009277 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010218 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009974 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000413 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000502 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008984 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004827 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000381 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010600 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008182 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010786 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007914 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005267 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010469 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008998 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007889 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007717 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007083 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010319 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010755 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024343 mhpT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005099 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000354 mhpT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000356 mhpT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000599 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000550 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000579 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000387 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000383 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130299 mhpT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004974 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002122 mhpT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002994 CDS
Person Approved Go view Shigella sonnei 046 ADD-0000360 mhpT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 370459 to 381670
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001198mhpBCDSforward370277371221Upstream
ABE-0001201mhpCCDSforward371239372105Upstream
ABE-0001205mhpDCDSforward372115372924Upstream
ABE-0001207mhpFCDSforward372921373871Upstream
ABE-0001209mhpECDSforward373868374881Upstream
ABE-0285354repeat_regionforward374930375365Upstream
ABE-0001213mhpTCDSforward375459376670Matches
ABE-0001216yaiLCDSforward376772377311Downstream
ABE-0285355repeat_regionforward377335377521Downstream
ABE-0001219frmBCDScomplement377535378368Downstream
ABE-0001221frmACDScomplement378462379571Downstream
ABE-0001226frmRCDScomplement379606379881Downstream
ABE-0001230yaiOCDScomplement380069380842Downstream
ABE-0001232yaiX_2CDSpcomplement380844381059Downstream
ABE-0285111yaiXpseudogenecomplement380844381254(Interval #2) Downstream
ABE-0001235is_elementcomplement381260382590Downstream
ABE-0285356mobile_elementforward381260382590Downstream
ABE-0001237insC-1CDSforward381351381716Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.