Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001221 (frmA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001221 showshow history
Names
frmA JW0347 ECK0353 adhC b0356
Product
alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 378462 379571 1110 370
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Apr 2008
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Apr 2008
Automated Process Approved IPR002328 (IPR002328 Alcohol dehydrogenase, zinc-type, conserved site) Apr 2008
Automated Process Approved IPR014183 (IPR014183 Alcohol dehydrogenase class III) Apr 2008
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR020843 (IPR020843 Polyketide synthase, enoylreductase domain) Jul 2018
Automated Process Approved PF08240 (PF08240 Alcohol dehydrogenase GroES-like domain) Jul 2018
Automated Process Approved PF00107 (PF00107 Zinc-binding dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006069 ethanol oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149, IPR014183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name frmA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0353 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0347 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym adhC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Feb 2004
Person Approved locus tag b0356 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00107 Zinc-binding dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00107
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014183 Alcohol dehydrogenase class III Protein Sequence Similarity - InterPro Domain: IPR014183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08240 Alcohol dehydrogenase GroES-like domain Protein Sequence Similarity - PFAM Model Name: PF08240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020843 Polyketide synthase, enoylreductase domain Protein Sequence Similarity - InterPro Domain: IPR020843
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.284 Published Annotation - Swiss-Prot Accession Number: P25437 Feb 2006
Person Approved EC number 1.1.1.1 Published Annotation - Swiss-Prot Accession Number: P25437 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P25437 Published Annotation - Swiss-Prot Accession Number: P25437 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25437 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944988 Published Annotation - Entrez Gene Database ID: 944988
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG50010 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786552 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Fermentation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006113 - fermentation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73459.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006069 ethanol oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149, IPR014183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265634 adhC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268583 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001282 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001635 frmA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001508 frmA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001780 frmA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001504 frmA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000803 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004140 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002183 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002064 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007269 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014611 adhC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001725 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002645 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302989 adhC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002475 adhC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001338 adhC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000550 adhC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008197 adhC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000425 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006159 adhC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000340 adhC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003962 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009274 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010215 adhC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009977 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076539 frmA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000416 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000505 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007037 adhC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008987 adhC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000322 frmA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004831 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000384 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010603 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008185 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010789 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007917 adhC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005270 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010466 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009001 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007892 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007720 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007086 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010322 adhC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010758 adhC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024346 frmA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0010004 frmA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005103 adhC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000806 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000357 frmA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000359 frmA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000596 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000547 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000576 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000461 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000390 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000386 adhC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130302 frmA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004977 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000377 adhC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000978 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002103 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001957 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007116 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001922 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002039 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001874 adhC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002158 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002619 adhC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001528 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010384 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001263 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289608 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005792 adhc1 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062983 adhC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001528 adhC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000704 adhC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000121 adhC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006473 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146667 adhC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001588 adhC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005705 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001410 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001900 adh3 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005986 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004650 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004540 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004849 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006167 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005107 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005159 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004619 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005240 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006107 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004676 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001663 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006354 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005265 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005830 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005166 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001970 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095335 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007725 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005813 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006996 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004255 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005667 adhC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000363 frmA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003680 adhC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001131 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008137 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002248 frmA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001315 frmA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002567 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237549 adhC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007127 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000969 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005629 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001787 frmA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120239 frmA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005635 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004412 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002455 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004948 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032400 adhC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007804 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002980 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001767 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006613 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006456 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001589 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001928 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003051 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013210 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003936 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23656mutantTn5 InsertionRequest the StrainABE-0001221frmAadhC::Tn5KAN-I-SceI at position 825 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 373462 to 384571
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001207mhpFCDSforward372921373871Downstream
ABE-0001209mhpECDSforward373868374881Downstream
ABE-0285354repeat_regionforward374930375365Downstream
ABE-0001213mhpTCDSforward375459376670Downstream
ABE-0001216yaiLCDSforward376772377311Downstream
ABE-0285355repeat_regionforward377335377521Downstream
ABE-0001219frmBCDScomplement377535378368Downstream
ABE-0001221frmACDScomplement378462379571Matches
ABE-0001226frmRCDScomplement379606379881Upstream
ABE-0001230yaiOCDScomplement380069380842Upstream
ABE-0001232yaiX_2CDSpcomplement380844381059Upstream
ABE-0285111yaiXpseudogenecomplement380844381254(Interval #2) Upstream
ABE-0001235is_elementcomplement381260382590Upstream
ABE-0285356mobile_elementforward381260382590Upstream
ABE-0001237insC-1CDSforward381351381716Upstream
ABE-0001239insD-1CDSforward381674382579Upstream
ABE-0001241yaiX_1CDSpcomplement382504382872Upstream
ABE-0285111yaiXpseudogenecomplement382591382872(Interval #1) Upstream
ABE-0001243yaiPCDScomplement382739383935Upstream
ABE-0001249yaiSpseudogenecomplement383945384616Upstream
ABE-0285800ykiCCDSforward383960384079Upstream
ABE-0285162yaiS_1CDSpcomplement384059384616Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.