Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001256 (tauA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001256 showshow history
Names
tauA yaiR ssiA JW0357 ECK0362 b0365
Product
periplasmic-binding component of an ABC superfamily taurine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 385232 386194 963 321
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010068 (IPR010068 Taurine ABC transporter, substrate-binding protein TauA) Apr 2008
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Apr 2008
Automated Process Approved IPR007210 (IPR007210 ABC-type glycine betaine transport system, substrate-binding domain) Apr 2008
Automated Process Approved PF04069 (PF04069 Substrate binding domain of ABC-type glycine betaine transport system) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015734 taurine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010068
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tauA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0362 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0357 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yaiR Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym ssiA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0365 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic-binding component of an ABC superfamily taurine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name taurine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name taurine transport system periplasmic protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name taurine transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04069 Substrate binding domain of ABC-type glycine betaine transport system Protein Sequence Similarity - PFAM Model Name: PF04069
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010068 Taurine ABC transporter, substrate-binding protein TauA Protein Sequence Similarity - InterPro Domain: IPR010068
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.175 (transport; substrate; taurine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13300 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001256 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945030 Published Annotation - Entrez Gene Database ID: 945030
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081727 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q47537 Published Annotation - Swiss-Prot Accession Number: Q47537 Jan 2006
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note taurine transport system periplasmic protein; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006790 - sulfur metabolic process; GO_process: GO:0009310 - amine catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73468.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0015734 taurine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010068
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002770 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002413 tauA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002332 tauA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001330 tauA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002495 tauA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000643 tauA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000197 tauA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001118 tauA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001647 tauA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001351 tauA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306337 tauA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003633 tauA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003293 tauA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000547 tauA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008189 tauA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006150 tauA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000346 tauA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003955 tauA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009266 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008442 tauA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006883 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076546 tauA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000422 tauA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000513 tauA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007030 tauA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008994 tauA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000324 tauA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004839 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002404 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010612 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008194 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009741 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007927 tauA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005279 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008925 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009010 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008827 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007729 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007150 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007956 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006503 tauA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024355 tauA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008652 tauA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005111 tauA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000366 tauA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000368 tauA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000589 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000540 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000569 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000468 tauA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174564 tauA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000396 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000393 tauA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130310 tauA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005039 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000385 tauA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003384 tauA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000396 tauA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000312 tauA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003330 tauA CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002789 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000296 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002936 tauA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001063 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003753 tauA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000401 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011394 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000430 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288812 tauA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006672 tauA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005397 tauA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001277 tauA CDS
Person Approved Go view Shigella boydii 227 ADV-0000283 tauA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005674 tauA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005024 tauA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000566 tauA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0071219 tauA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0086615 tauA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000344 tauA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000372 tauA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001471 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011383 ssiA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001072 tauA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001940 tauA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001008 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234641 tauA1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007818 tauA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003928 tauA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007356 tauA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003121 tauA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115921 tauA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006904 tauA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008240 tauA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001592 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009453 tauA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006841 tauA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033759 tauA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004952 tauA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004656 tauA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000126 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004450 tauA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007974 tauA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003840 tauA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004654 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000308 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008763 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001469 tauA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21997mutantTn5 InsertionRequest the StrainABE-0001256tauAtauA::Tn5KAN-2 at position 269 in Minus orientation ,+ pKD460Blattner Laboratory
FB21998mutantTn5 InsertionRequest the StrainABE-0001256tauAtauA::Tn5KAN-2 at position 301 in Plus orientation ,+ pKD460Blattner Laboratory
FB23043mutantTn5 InsertionRequest the StrainABE-0001256tauAtauA::Tn5KAN-I-SceI at position 301 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 380232 to 391194
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001230yaiOCDScomplement380069380842Upstream
ABE-0001232yaiX_2CDSpcomplement380844381059Upstream
ABE-0285111yaiXpseudogenecomplement380844381254(Interval #2) Upstream
ABE-0001235is_elementcomplement381260382590Upstream
ABE-0285356mobile_elementforward381260382590Upstream
ABE-0001237insC-1CDSforward381351381716Upstream
ABE-0001239insD-1CDSforward381674382579Upstream
ABE-0001241yaiX_1CDSpcomplement382504382872Upstream
ABE-0285111yaiXpseudogenecomplement382591382872(Interval #1) Upstream
ABE-0001243yaiPCDScomplement382739383935Upstream
ABE-0001249yaiSpseudogenecomplement383945384616Upstream
ABE-0285800ykiCCDSforward383960384079Upstream
ABE-0285162yaiS_1CDSpcomplement384059384616Upstream
ABE-0001256tauACDSforward385232386194Matches
ABE-0001259tauBCDSforward386207386974Downstream
ABE-0001261tauCCDSforward386971387798Downstream
ABE-0001263tauDCDSforward387795388646Downstream
ABE-0001266hemBCDScomplement388753389727Downstream
ABE-0001274yaiT_1CDSpforward390251391711Downstream
ABE-0285112yaiTpseudogeneforward390251391708(Interval #1) Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.