Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001259 (tauB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001259 showshow history
Names
tauB yaiQ ssiB JW0358 ECK0363 b0366
Product
ATP-binding component of an ABC superfamily taurine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 386207 386974 768 256
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tauB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0358 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0363 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ssiB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yaiQ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0366 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of an ABC superfamily taurine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name taurine ATP-binding component of a transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name taurine transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name taurine transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.6.3.36 Published Annotation - Swiss-Prot Accession Number: Q47538 Feb 2006
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.175 (transport; substrate; taurine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786563 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001259 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13299 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q47538 Published Annotation - Swiss-Prot Accession Number: Q47538 Jan 2006
Automated Process Approved db xref GeneID:945027 Published Annotation - Entrez Gene Database ID: 945027
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note taurine ATP-binding component of a transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006790 - sulfur metabolic process; GO_process: GO:0009310 - amine catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73469.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002090 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002391 tauB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002232 tauB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001756 tauB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002435 tauB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000644 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000198 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001119 tauB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001648 tauB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006101 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017140 tauB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002996 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001352 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306333 tauB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003632 tauB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003292 tauB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000546 tauB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008188 tauB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000433 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006149 tauB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000347 tauB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003954 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009265 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008443 tauB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006884 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076547 tauB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000423 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000514 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007029 tauB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008995 tauB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000325 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002403 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010613 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008195 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009742 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007928 tauB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005280 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008924 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009011 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008828 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007730 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007151 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007957 tauB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006504 tauB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024356 tauB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008653 tauB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005112 tauB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000800 tauB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000367 tauB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000369 tauB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000588 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000539 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000568 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000469 tauB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000397 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000394 tauB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130311 tauB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005040 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000386 tauB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003383 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000313 tauB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003331 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007504 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002788 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000295 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002935 tauB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001064 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003752 tauB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000402 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011393 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000429 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288811 tauB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006671 tauB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061783 tauB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000872 tauB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003736 tauB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001801 tauB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006157 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005398 tauB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001278 CDS
Person Approved Go view Shigella boydii 227 ADV-0000284 tauB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005675 tauB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005023 tauB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000565 tauB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071218 tauB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086614 tauB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000345 tauB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000373 tauB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001470 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011379 ssiB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001071 tauB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001941 tauB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001009 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234644 tauB1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007817 tauB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003927 tauB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007355 tauB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003120 tauB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115922 tauB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006903 tauB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008239 tauB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001591 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009454 tauB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006842 tauB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033760 tauB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004951 tauB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004655 tauB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000128 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004449 tauB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007973 tauB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003839 tauB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004653 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000310 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008769 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001470 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21999mutantTn5 InsertionRequest the StrainABE-0001259tauBtauB::Tn5KAN-2 at position 405 in Minus orientation ,+ pKD460Blattner Laboratory
FB23044mutantTn5 InsertionRequest the StrainABE-0001259tauBtauB::Tn5KAN-2 at position 405 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 381207 to 391974
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285111yaiXpseudogenecomplement380844381254(Interval #2) Upstream
ABE-0001235is_elementcomplement381260382590Upstream
ABE-0285356mobile_elementforward381260382590Upstream
ABE-0001237insC-1CDSforward381351381716Upstream
ABE-0001239insD-1CDSforward381674382579Upstream
ABE-0001241yaiX_1CDSpcomplement382504382872Upstream
ABE-0285111yaiXpseudogenecomplement382591382872(Interval #1) Upstream
ABE-0001243yaiPCDScomplement382739383935Upstream
ABE-0001249yaiSpseudogenecomplement383945384616Upstream
ABE-0285800ykiCCDSforward383960384079Upstream
ABE-0285162yaiS_1CDSpcomplement384059384616Upstream
ABE-0001256tauACDSforward385232386194Upstream
ABE-0001259tauBCDSforward386207386974Matches
ABE-0001261tauCCDSforward386971387798Overlaps Downstream
ABE-0001263tauDCDSforward387795388646Downstream
ABE-0001266hemBCDScomplement388753389727Downstream
ABE-0001274yaiT_1CDSpforward390251391711Downstream
ABE-0285112yaiTpseudogeneforward390251391708(Interval #1) Downstream
ABE-0285803ytiBCDScomplement391592391648Downstream
ABE-0001275mobile_elementcomplement391709392966Downstream
ABE-0001277insF-2CDScomplement391739392605Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.