Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001328 (phoA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001328 showshow history
Names
phoA psiA JW0374 ECK0378 b0383
Product
bacterial alkaline phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 401747 403162 1416 472
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001952 (IPR001952 Alkaline phosphatase) Apr 2008
Automated Process Approved IPR017850 (IPR017850 Alkaline-phosphatase-like, core domain superfamily) Jul 2018
Automated Process Approved PF00245 (PF00245 Alkaline phosphatase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001952
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017850
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001952
Reference: Escherichia coli K-12 MG1655
Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phoA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK0378 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0374 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym psiA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b0383 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bacterial alkaline phosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name alkaline phosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family PF00245 Alkaline phosphatase Protein Sequence Similarity - PFAM Model Name: PF00245
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR017850 Alkaline-phosphatase-like, core domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017850
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001952 Alkaline phosphatase Protein Sequence Similarity - InterPro Domain: IPR001952
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Automated Process Uncurated EC number 3.1.3.41 Published Annotation - Database Name: EC2GO: GO:0016791
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated EC number 3.1.3.- Published Annotation - Database Name: EC2GO: GO:0016791
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 3.1.3.1 Published Annotation - Swiss-Prot Accession Number: P00634 Feb 2006
Person Approved MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.8.1 (metabolism; metabolism of other compounds; phosphorous metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945041 Published Annotation - Entrez Gene Database ID: 945041
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0001328 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P00634 Published Annotation - Swiss-Prot Accession Number: P00634 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00634 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:48994877 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10727 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 7.2 location of gene products; periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Phosphorus compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved function 1.8.1 metabolism; metabolism of other compounds; phosphorous metabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved note start codon corrected Experimental - PubMed ID: 6273802
Reference: Escherichia coli
Jan 2004
Automated Process Approved note alkaline phosphatase; start codon corrected; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006793 - phosphorus metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73486.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001952
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0006793 phosphorus metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017850
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001952
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002174 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002460 phoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002338 phoA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002947 phoA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002571 phoA CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003228 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001137 phoA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001664 phoA CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020389 phoA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000174 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302522 phoA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002297 phoA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001496 phoA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000532 phoA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008173 phoA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000446 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006133 phoA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000360 phoA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003939 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009246 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008460 phoA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006900 phoA pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076564 phoA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000444 phoA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000535 phoA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007012 phoA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009011 phoA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000338 phoA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004860 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002386 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010629 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008211 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009758 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007943 phoA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005296 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008909 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009027 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008844 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007747 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007166 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007973 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006519 phoA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024370 phoA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008667 phoA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005132 phoA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000787 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000384 phoA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000386 phoA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000571 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000522 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000551 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000485 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174579 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000413 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000412 phoA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130324 phoA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005058 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000403 phoA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001241 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001505 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000328 phoA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003347 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008912 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010100 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146506 phoA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004281 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264385 CDS
Person Approved Go view Shigella boydii 227 ADV-0000305 phoA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005001 phoA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071192 phoA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086593 phoA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000362 phoA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000387 phoA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003140 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006074 phoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000996 phoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000663 phoA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000456 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239275 phoA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006404 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001988 phoA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004787 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001160 phoA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122904 phoA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007071 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007503 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002507 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007968 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005938 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031837 phoA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008157 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002117 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001007 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007076 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005806 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002304 phoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002731 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002300 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008822 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001485 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 396747 to 408162
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001297sbmACDSforward396639397859Upstream
ABE-0001299yaiWCDSforward397872398966Upstream
ABE-0285357repeat_regionforward398980399014Upstream
ABE-0001302yaiYCDScomplement399025399333Upstream
ABE-0001307yaiZCDSforward399593399805Upstream
ABE-0001309ddlACDScomplement399829400923Upstream
ABE-0001313iraPCDSforward401386401646Upstream
ABE-0001328phoACDSforward401747403162Matches
ABE-0001330psiFCDSforward403281403601Downstream
ABE-0001336dgcCCDSforward403703404818Downstream
ABE-0001338proCCDScomplement404835405644Downstream
ABE-0001344yaiICDSforward405764406222Downstream
ABE-0001353aroLCDSforward406405406929Downstream
ABE-0001355yaiACDSforward406979407170Downstream
ABE-0001357aroMCDSforward407428408105Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.