Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001372 (mak) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001372 showshow history
Names
mak yajF JW0385 ECK0389 b0394
Product
manno(fructo)kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 410144 411052 909 303
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000154
EnteroFam0001372: Trusted threshold=778.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000600 (IPR000600 ROK family) Apr 2008
Automated Process Approved PF00480 (PF00480 ROK family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mak Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0385 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0389 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yajF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b0394 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product manno(fructo)kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name possible NAGC-like transcriptional regulator Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative kinase/transcriptional regulator (NagC/XylR (ROK) familiy) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001372: Trusted threshold=778.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000154
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000600 ROK family Protein Sequence Similarity - InterPro Domain: IPR000600
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00480 ROK family Protein Sequence Similarity - PFAM Model Name: PF00480
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved EC number 2.7.1.4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P23917 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11288 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23917 Published Annotation - Swiss-Prot Accession Number: P23917 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23917 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949086 Published Annotation - Entrez Gene Database ID: 949086
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081733 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001372 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative regulator; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note possible NAGC-like transcriptional regulator; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73497.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000154 mak CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000536 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002019 mak CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001962 mak CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001911 mak CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001955 mak CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000938 mak CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003219 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001147 mak CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001674 mak_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008117 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017539 mak CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001028 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001380 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000522 mak CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008161 mak CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000458 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006119 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000370 yajF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003927 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009234 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008471 mak CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006911 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076577 mak CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000455 mak CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000547 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007001 mak CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009023 mak CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000349 mak CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004871 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002374 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010641 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008223 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009770 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005308 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008897 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009039 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008856 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007759 mak CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007178 mak CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007985 mak CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006531 mak CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024384 mak CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008679 mak_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005143 mak CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000775 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000395 mak CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000397 mak CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000558 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000509 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000538 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000498 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000424 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000423 mak CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130336 mak CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005070 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000416 yajF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002796 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003825 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000338 yajF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003357 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007838 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000241 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001555 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000281 mak CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003940 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000990 mak CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003329 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008654 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002638 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287589 mak CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004092 yajF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061352 mak CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002076 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001498 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001598 mak CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005658 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004608 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002665 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000504 mak CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004708 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001266 yajF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001242 yajF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005746 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004857 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004213 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004718 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004806 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006946 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002348 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002330 mak CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003211 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005096 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007017 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004539 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006758 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106118 mak CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084186 mak CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000466 yajF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091777 mak CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009104 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006480 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004822 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265222 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005708 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004988 mak CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000379 yajF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071300 yajF CDS
Person Approved Go view Shigella flexneri 301 ABT-0086692 mak CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000377 yajF CDS
Person Approved Go view Shigella sonnei 046 ADD-0000403 mak CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000286 VC0270 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006746 mak CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002621 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009232 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001904 mak_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001846 mak CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000811 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235836 mak CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007412 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003246 mak CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006983 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000322 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126128 mak CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007439 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006785 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002729 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005172 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004446 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030627 mak CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007549 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001074 mak CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003409 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005092 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007147 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000966 mak CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001128 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003890 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008849 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001494 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23335mutantTn5 InsertionRequest the StrainABE-0001372makyajF::Tn5KAN-I-SceI at position 213 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 405144 to 416052
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001338proCCDScomplement404835405644Upstream
ABE-0001344yaiICDSforward405764406222Upstream
ABE-0001353aroLCDSforward406405406929Upstream
ABE-0001355yaiACDSforward406979407170Upstream
ABE-0001357aroMCDSforward407428408105Upstream
ABE-0001360ppnPCDSforward408177408461Upstream
ABE-0001363ykiApseudogeneforward408609408950Upstream
ABE-0285743ykiDpseudogeneforward408947409030Upstream
ABE-0285358repeat_regionforward409052409088Upstream
ABE-0001366rdgCCDScomplement409108410019Upstream
ABE-0001372makCDSforward410144411052Matches
ABE-0285359repeat_regionforward411078411268Downstream
ABE-0001378araJCDScomplement411297412481Downstream
ABE-0001381sbcCCDScomplement412607415753Downstream
ABE-0001383sbcDCDScomplement415750416952Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.