Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001394 (brnQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001394 showshow history
Names
brnQ JW0391 ECK0395 hrbA b0401
Product
branched chain amino acid transporter (LIV-II)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 419591 420910 1320 440
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000159
EnteroFam0001394: Trusted threshold=1141; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004685 (IPR004685 Branched-chain amino acid transport system II carrier protein) Apr 2008
Automated Process Approved PF05525 (PF05525 Branched-chain amino acid transport protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015803 branched-chain amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015658 branched-chain amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name brnQ Published Annotation - PubMed ID: 4945181
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym hrbA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0391 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0395 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0401 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product branched chain amino acid transporter (LIV-II) Experimental - PubMed ID: 3078876
Reference: Salmonella Typhimurium LT2 		Sep 2007
Person Approved alternate product name branched chain amino acid transport system II carrier protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted branched chain amino acid transporter (LIV-II) Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name branched-chain amino acid transport system II (LIV-II) (LIVCS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001394: Trusted threshold=1141; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000159
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF05525 Branched-chain amino acid transport protein Protein Sequence Similarity - PFAM Model Name: PF05525
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004685 Branched-chain amino acid transport system II carrier protein Protein Sequence Similarity - InterPro Domain: IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.26 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.137 (transport; substrate; Na+/leucine/valine/iso-leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.19 (metabolism; building block biosynthesis; amino acids; leucine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.18 (metabolism; building block biosynthesis; amino acids; isoleucine/valine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945042 Published Annotation - Entrez Gene Database ID: 945042
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AD99 Published Annotation - Swiss-Prot Accession Number: P0AD99 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AD99 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786601 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12168 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001394 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note branched chain amino acid transport system II carrier protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009098 - leucine biosynthetic process; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73504.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015803 branched-chain amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009098 leucine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015658 branched-chain amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004685
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000159 brnQ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000711 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000482 brnQ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000635 brnQ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000059 brnQ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000253 brnQ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003362 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001671 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000950 brnQ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003214 brnQ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001152 brnQ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001680 brnQ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008108 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017549 brnQ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001035 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001386 brnQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299055 brnQ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001071 brnQ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002628 brnQ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000514 brnQ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008152 brnQ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000464 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006110 brnQ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000376 brnQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003920 brnQ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009225 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008478 brnQ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006918 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076585 brnQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000463 brnQ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000554 brnQ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006995 brnQ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009031 brnQ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000355 brnQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004881 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002365 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010650 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008232 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009779 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007964 brnQ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005317 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008888 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009048 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008865 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007768 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007187 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007994 brnQ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006539 brnQ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024390 brnQ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008685 brnQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005152 brnQ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000769 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000401 brnQ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000403 brnQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000724 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000503 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000532 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000506 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174598 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000431 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000431 brnQ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130342 brnQ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005079 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000424 brnQ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002783 brnQ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003981 brnQ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000343 brnQ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003363 brnQ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007829 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000254 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001567 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000289 brnQ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003932 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000998 brnQ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003321 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008668 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002652 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287579 brnQ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004106 brnQ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061359 brnQ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002072 brnQ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001502 brnQ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001605 brnQ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005666 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145728 brnQ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002250 brnQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004616 brnQ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002658 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000511 brnQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004715 brnQ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001289 brnQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001264 brnQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005739 brnQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004865 brnQ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004221 brnQ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004726 brnQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006765 brnQ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008884 brnQ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004814 brnQ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006954 brnQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002342 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002324 brnQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003202 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005104 brnQ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007009 brnQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004547 brnQ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006766 brnQ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106132 brnQ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084180 brnQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000474 brnQ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091803 brnQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009095 brnQ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005434 brnQ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006488 brnQ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004813 brnQ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264504 brnQ CDS
Person Approved Go view Shigella boydii 227 ADV-0000322 brnQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005716 brnQ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004982 brnQ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000369 brnQ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071307 brnQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0086698 brnQ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000383 brnQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000409 brnQ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000721 VC0662 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001263 brnQ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003628 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009200 brnQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001898 brnQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003811 brnQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000817 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235848 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007405 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003234 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006975 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000329 brnQ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126094 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007448 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006835 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002720 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005160 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004455 brnQ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030633 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007559 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001082 brnQ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003400 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005104 brnQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007140 brnQ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000972 brnQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001136 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003881 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008890 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001500 brnQ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 414591 to 425910
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001381sbcCCDScomplement412607415753Upstream
ABE-0001383sbcDCDScomplement415750416952Upstream
ABE-0001389phoBCDSforward417142417831Upstream
ABE-0001391phoRCDSforward417889419184Upstream
ABE-0001394brnQCDSforward419591420910Matches
ABE-0001398proYCDSforward420986422359Downstream
ABE-0285360repeat_regionforward422372422404Downstream
ABE-0001402malZCDSforward422518424332Downstream
ABE-0001404acpHCDScomplement424337424918Downstream
ABE-0001411queACDSforward425011426081Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.