Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001402 (malZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001402 showshow history
Names
malZ JW0393 ECK0397 b0403
Product
maltodextrin glucosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 422518 424332 1815 605

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Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR006589 (IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain) Apr 2008
Automated Process Approved IPR014756 (IPR014756 Immunoglobulin E-set) Apr 2008
Automated Process Approved IPR006047 (IPR006047 Glycosyl hydrolase, family 13, catalytic domain) Apr 2008
Automated Process Approved IPR004185 (IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain) Jul 2018
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF02903 (PF02903 Alpha amylase, N-terminal ig-like domain) Jul 2018
Automated Process Approved PF00128 (PF00128 Alpha amylase, catalytic domain) Jul 2018
Automated Process Uncurated CBM34 (CBM34 Carbohydrate-Binding Module Family 34) Jul 2018
Automated Process Uncurated GH13 (GH13 Glycoside Hydrolase Family 13) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0000272 polysaccharide catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0397 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0393 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0403 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product maltodextrin glucosidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name maltodextrin glucosidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF02903 Alpha amylase, N-terminal ig-like domain Protein Sequence Similarity - PFAM Model Name: PF02903
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006589
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014756 Immunoglobulin E-set Protein Sequence Similarity - InterPro Domain: IPR014756
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00128 Alpha amylase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00128
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006047 Glycosyl hydrolase, family 13, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006047
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain Protein Sequence Similarity - InterPro Domain: IPR004185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family CBM34 Carbohydrate-Binding Module Family 34 Protein Sequence Similarity - CAZy Model Name: CBM34
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH13 Glycoside Hydrolase Family 13 Protein Sequence Similarity - CAZy Model Name: GH13
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.20 Published Annotation - Swiss-Prot Accession Number: P21517 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.2.4 (metabolism; macromolecule degradation; polysaccharides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21517 Published Annotation - Swiss-Prot Accession Number: P21517 Jan 2005
Automated Process Approved db xref GeneID:949131 Published Annotation - Entrez Gene Database ID: 949131
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001402 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10565 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:345297171 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21517 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0000272 - polysaccharide catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73506.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0000272 polysaccharide catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005369 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002208 malZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002413 malZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002347 malZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002573 malZ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000953 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003212 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001154 tvaI CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001682 tvaI CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001388 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008150 malZ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000466 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006108 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000378 malZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003918 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009222 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008480 malZ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006920 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076587 malZ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000465 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000556 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006993 malZ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009033 malZ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000357 malZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004883 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002363 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010652 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008234 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009781 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007966 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005319 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008886 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009050 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008867 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007770 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007189 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007996 malZ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006541 malZ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024392 malZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008687 malZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005154 malZ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000767 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000403 malZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000405 malZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000722 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000501 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000530 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000508 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174600 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000433 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000433 malZ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130344 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005081 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000426 malZ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000345 malZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003365 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004618 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002655 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000513 malZ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001300 malZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001273 malZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005737 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004867 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004223 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004728 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006767 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008886 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004816 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006956 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002340 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002322 malZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003200 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005106 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007007 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004549 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006768 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106140 malZ CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084177 malZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000476 malZ CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091809 malZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009093 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005432 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006490 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004809 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004980 malZ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071309 malZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0086700 malZ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000385 malZ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000411 malZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002874 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009193 malZ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001896 malZ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003813 malZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000819 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235875 malZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007403 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003231 malZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006973 malZ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000331 malZ CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126077 malZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007453 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006838 malZ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002213 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005158 malZ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004457 malZ CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030635 malZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007561 malZ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001086 malZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003397 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005106 malZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007138 malZ CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000974 malZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001140 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003878 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008894 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 417518 to 429332
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001389phoBCDSforward417142417831Upstream
ABE-0001391phoRCDSforward417889419184Upstream
ABE-0001394brnQCDSforward419591420910Upstream
ABE-0001398proYCDSforward420986422359Upstream
ABE-0285360repeat_regionforward422372422404Upstream
ABE-0001402malZCDSforward422518424332Matches
ABE-0001404acpHCDScomplement424337424918Downstream
ABE-0001411queACDSforward425011426081Downstream
ABE-0001413tgtCDSforward426137427264Downstream
ABE-0001415yajCCDSforward427287427619Downstream
ABE-0001417secDCDSforward427647429494Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.