Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001452 (thiL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001452 showshow history
Names
thiL JW0407 ECK0411 thiJ b0417
Product
thiamin-monophosphate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 435634 436611 978 326
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000169
EnteroFam0001452: Trusted threshold=846.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006283 (IPR006283 Thiamine-monophosphate kinase) Apr 2008
Automated Process Approved IPR010918 (IPR010918 PurM-like, C-terminal domain) Apr 2008
Automated Process Approved IPR016188 (IPR016188 PurM-like, N-terminal domain) Jul 2018
Automated Process Approved IPR036921 (IPR036921 PurM-like, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036676 (IPR036676 PurM-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00586 (PF00586 AIR synthase related protein, N-terminal domain) Jul 2018
Automated Process Approved PF02769 (PF02769 AIR synthase related protein, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006283
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009030 thiamine-phosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006283
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thiL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0411 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0407 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym thiJ Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0417 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thiamin-monophosphate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name thiamin-monophosphate kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001452: Trusted threshold=846.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000169
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006283 Thiamine-monophosphate kinase Protein Sequence Similarity - InterPro Domain: IPR006283
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010918 PurM-like, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR010918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016188 PurM-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR016188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02769 AIR synthase related protein, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02769
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00586 AIR synthase related protein, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00586
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036676 PurM-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036676
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036921 PurM-like, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.4.16 Published Annotation - Swiss-Prot Accession Number: P0AGG0 Feb 2006
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGG0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001452 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786619 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947387 Published Annotation - Entrez Gene Database ID: 947387
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AGG0 Published Annotation - Swiss-Prot Accession Number: P0AGG0 Jan 2006
Automated Process Approved db xref EcoGene:EG20227 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thiamin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73520.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006283
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009030 thiamine-phosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006283
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000169 thiL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000723 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000393 thiL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000394 thiL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000378 thiL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000457 thiL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003379 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001687 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129730 thiL CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104574 thiL CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000972 thiL CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003195 thiL CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001182 thiL CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001702 thiL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008091 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017566 thiL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001054 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001404 thiL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299112 thiL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001090 thiL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002613 thiL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000496 thiL CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008136 thiL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000480 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006094 thiL CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000392 thiL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003904 thiL CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009206 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008494 thiL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006934 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076602 thiL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000479 thiL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000570 thiL CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006978 thiL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009047 thiL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000371 thiL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004898 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002346 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010669 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008251 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009800 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007985 thiL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005338 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008869 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009067 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008886 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007787 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007209 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008013 thiL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006558 thiL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024411 thiL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008701 thiL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005169 thiL CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000753 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000417 thiL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000419 thiL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000707 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000487 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000515 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000523 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174614 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000448 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000452 thiL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130361 thiL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005099 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000441 thiL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002768 thiL CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003963 thiL CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000370 thiL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003381 thiL CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007812 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000279 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001592 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000305 thiL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003916 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001013 thiL CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003306 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008684 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002668 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290740 thiL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004122 thiL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061374 thiL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000617 thiL CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001511 thiL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002045 thiL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005685 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145693 thiL CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000708 thiL CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004636 thiL CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002636 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000532 thiL CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004736 thiL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001346 thiL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001319 thiL CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005717 thiL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004887 thiL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004242 thiL CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004746 thiL CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006786 thiL CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008905 thiL CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004836 thiL CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006975 thiL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002321 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002304 thiL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003178 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005126 thiL CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006987 thiL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004569 thiL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006788 thiL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106169 thiL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084159 thiL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000497 thiL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091864 thiL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009072 thiL CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005412 thiL CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006510 thiL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004794 thiL CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267100 thiL CDS
Person Approved Go view Shigella boydii 227 ADV-0000338 thiL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005734 thiL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004966 thiL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000349 thiL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071324 thiL CDS
Person Approved Go view Shigella flexneri 301 ABT-0086714 thiL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000399 thiL CDS
Person Approved Go view Shigella sonnei 046 ADD-0000425 thiL CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001421 thiL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002359 VC2266 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000646 thiL CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001295 thiL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002860 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009152 thiL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001881 thiL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000886 thiL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000834 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235915 thiL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007286 thiL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003210 thiL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006954 thiL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000350 thiL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126023 thiL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007472 thiL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006857 thiL CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003093 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005139 thiL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004477 thiL CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030656 thiL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007581 thiL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001107 thiL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003377 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005125 thiL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007121 thiL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000989 thiL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001156 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003861 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008972 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 430634 to 441611
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001422yajDCDSforward430605430952Upstream
ABE-0285361repeat_regionforward430968431065Upstream
ABE-0001425tsxCDScomplement431129432013Upstream
ABE-0001433yajICDScomplement432312432851Upstream
ABE-0001437nrdRCDSforward433002433451Upstream
ABE-0001441ribDCDSforward433455434558Upstream
ABE-0001444ribECDSforward434647435117Upstream
ABE-0001447nusBCDSforward435137435556Upstream
ABE-0001452thiLCDSforward435634436611Matches
ABE-0001454pgpACDSforward436589437107Overlaps Downstream
ABE-0285362repeat_regionforward437120437156Downstream
ABE-0001457yajOCDScomplement437161438135Downstream
ABE-0001461dxsCDScomplement438315440177Downstream
ABE-0001463ispACDScomplement440202441101Downstream
ABE-0001466xseBCDScomplement441101441343Downstream
ABE-0001470thiICDSforward441549442997Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.