Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001454 (pgpA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001454 showshow history
Names
pgpA yajN JW0408 ECK0412 b0418
Product
phosphatidylglycerophosphatase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 436589 437107 519 173
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000170
EnteroFam0001454: Trusted threshold=433.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007686 (IPR007686 YutG/PgpA domain) Apr 2008
Automated Process Approved IPR026037 (IPR026037 Phosphatidylglycerophosphatase A) Jul 2018
Automated Process Approved IPR036681 (IPR036681 PgpA-like superfamily) Jul 2018
Automated Process Approved PF04608 (PF04608 Phosphatidylglycerophosphatase A) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008962 phosphatidylglycerophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pgpA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0412 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0408 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yajN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0418 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphatidylglycerophosphatase A Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphatidylglycerophosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name phosphatidylglycerophosphatase A Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001454: Trusted threshold=433.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000170
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR007686 YutG/PgpA domain Protein Sequence Similarity - InterPro Domain: IPR007686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036681 PgpA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036681
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR026037 Phosphatidylglycerophosphatase A Protein Sequence Similarity - InterPro Domain: IPR026037
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04608 Phosphatidylglycerophosphatase A Protein Sequence Similarity - PFAM Model Name: PF04608
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.1.3.27 Published Annotation - Swiss-Prot Accession Number: P18200 Feb 2006
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P18200 Published Annotation - Swiss-Prot Accession Number: P18200 Jan 2005
Automated Process Approved db xref GeneID:947542 Published Annotation - Entrez Gene Database ID: 947542
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786620 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P18200 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001454 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10704 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule synthesis, modification: Phospholipids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphatidylglycerophosphatase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73521.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008962 phosphatidylglycerophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000170 pgpA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001848 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001354 pgpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001703 pgpA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001364 pgpA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001993 pgpA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003380 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001688 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000973 pgpA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001183 pgpA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001703 pgpA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008089 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017567 pgpA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001055 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299114 pgpA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001091 pgpA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002612 pgpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000495 pgpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008135 pgpA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000481 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006093 pgpA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000393 pgpA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003903 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009204 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008495 pgpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006935 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076603 pgpA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000480 pgpA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000571 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006977 pgpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009048 pgpA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000372 pgpA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004899 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002345 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010670 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008252 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009801 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007986 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005339 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008868 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009068 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008887 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007788 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007210 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008014 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006559 pgpA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024412 pgpA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008702 pgpA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005170 pgpA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000752 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000418 pgpA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000420 pgpA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000706 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000486 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000514 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000524 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174615 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000449 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000453 pgpA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130362 pgpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005100 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000442 pgpA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002767 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003962 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000371 pgpA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007811 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000280 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001593 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003915 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001014 pgpA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003305 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008685 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290741 pgpA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004123 pgpA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061375 pgpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003199 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003627 pgpA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005686 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145692 pgpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004637 pgpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002635 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000533 pgpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004737 pgpA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001348 pgpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001321 pgpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005716 pgpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004888 pgpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004243 pgpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004747 pgpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006787 pgpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008906 pgpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004837 pgpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006976 pgpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002320 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002303 pgpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003177 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005127 pgpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006986 pgpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004570 pgpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006789 pgpA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106171 pgpA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084158 pgpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000498 pgpA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091867 pgpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009071 pgpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005411 pgpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006511 pgpA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004793 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267099 pgpA CDS
Person Approved Go view Shigella boydii 227 ADV-0000339 pgpA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005735 pgpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004965 pgpA CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000348 pgpA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071325 pgpA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086715 pgpA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000400 pgpA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000426 pgpA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001420 pgpA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002358 VC2265 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000647 pgpA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001297 pgpA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002859 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009150 pgpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001880 pgpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000885 pgpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000835 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235916 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007287 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003209 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006953 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000351 pgpA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126018 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007473 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006858 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003094 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005138 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004478 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030657 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007582 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001108 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003376 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005126 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007120 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000990 pgpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001157 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003860 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008977 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 431589 to 442107
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001425tsxCDScomplement431129432013Upstream
ABE-0001433yajICDScomplement432312432851Upstream
ABE-0001437nrdRCDSforward433002433451Upstream
ABE-0001441ribDCDSforward433455434558Upstream
ABE-0001444ribECDSforward434647435117Upstream
ABE-0001447nusBCDSforward435137435556Upstream
ABE-0001452thiLCDSforward435634436611Overlaps Upstream
ABE-0001454pgpACDSforward436589437107Matches
ABE-0285362repeat_regionforward437120437156Downstream
ABE-0001457yajOCDScomplement437161438135Downstream
ABE-0001461dxsCDScomplement438315440177Downstream
ABE-0001463ispACDScomplement440202441101Downstream
ABE-0001466xseBCDScomplement441101441343Downstream
ABE-0001470thiICDSforward441549442997Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.