Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001461 (dxs) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001461 showshow history
Names
dxs yajP JW0410 ECK0414 b0420
Product
1-deoxyxylulose-5-phosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 438315 440177 1863 621
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000171
EnteroFam0001461: Trusted threshold=1792.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009014 (IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II) Apr 2008
Automated Process Approved IPR005474 (IPR005474 Transketolase, N-terminal) Apr 2008
Automated Process Approved IPR005475 (IPR005475 Transketolase-like, pyrimidine-binding domain) Apr 2008
Automated Process Approved IPR005477 (IPR005477 Deoxyxylulose-5-phosphate synthase) Apr 2008
Automated Process Approved IPR005476 (IPR005476 (DEPRECATED) Transketolase, C-terminal) Apr 2008
Automated Process Approved IPR033248 (IPR033248 Transketolase, C-terminal domain) Jul 2018
Automated Process Approved IPR029061 (IPR029061 Thiamin diphosphate-binding fold) Jul 2018
Automated Process Approved PF02780 (PF02780 Transketolase, C-terminal domain) Jul 2018
Automated Process Approved PF02779 (PF02779 Transketolase, pyrimidine binding domain) Jul 2018
Automated Process Approved PF13292 (PF13292 1-deoxy-D-xylulose-5-phosphate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005477
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005477
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dxs Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0414 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0410 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yajP Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0420 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 1-deoxyxylulose-5-phosphate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Person Approved alternate product name 1-deoxy-D-xylulose-5-phosphate synthase Published Annotation - Swiss-Prot Accession Number: P77488
Reference: Escherichia coli K-12 		Jan 2007
Person Approved alternate product name 1-deoxyxylulose-5-phosphate synthase; flavoprotein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001461: Trusted threshold=1792.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000171
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005474 Transketolase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005474
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Protein Sequence Similarity - InterPro Domain: IPR009014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005475 Transketolase-like, pyrimidine-binding domain Protein Sequence Similarity - InterPro Domain: IPR005475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005477 Deoxyxylulose-5-phosphate synthase Protein Sequence Similarity - InterPro Domain: IPR005477
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005476 (DEPRECATED) Transketolase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR033248 Transketolase, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR033248
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02780 Transketolase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02780
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02779 Transketolase, pyrimidine binding domain Protein Sequence Similarity - PFAM Model Name: PF02779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029061 Thiamin diphosphate-binding fold Protein Sequence Similarity - InterPro Domain: IPR029061
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13292 1-deoxy-D-xylulose-5-phosphate synthase Protein Sequence Similarity - PFAM Model Name: PF13292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.2.1.7 Published Annotation - Swiss-Prot Accession Number: P77488 Feb 2006
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77488 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786622 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77488 Published Annotation - Swiss-Prot Accession Number: P77488 Jan 2005
Automated Process Approved db xref EcoGene:EG13612 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945060 Published Annotation - Entrez Gene Database ID: 945060
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001461 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 1-deoxyxylulose-5-phosphate synthase; flavoprotein; GO_process: GO:0008615 - pyridoxine biosynthetic process; GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73523.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.16
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005477
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005477
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR009014
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000171 dxs CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000724 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000144 dxs CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000131 dxs CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000075 dxs CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000682 dxs CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003383 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001689 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129734 dxs CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104578 dxs CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000975 dxs CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003193 dxs CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001185 dxs_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001705 dxs CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008088 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017570 dxs CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001056 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001406 dxs CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299118 dxs CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001092 dxs CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002611 dxs CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000492 dxs CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008133 dxs CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000483 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006091 dxs CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000395 dxs CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003901 dxs CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009202 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008497 dxs CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006937 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076605 dxs CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000482 dxs CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000574 dxs CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006975 dxs CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009050 dxs CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000374 dxs CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004901 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010673 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008255 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009804 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007989 dxs CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005342 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008865 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009071 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008890 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007791 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007213 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008017 dxs CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006562 dxs CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024416 dxs CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008704 dxs CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005172 dxs CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000750 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000420 dxs CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000422 dxs CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000704 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000484 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000512 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000526 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174617 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000451 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000455 dxs CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130365 dxs CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005103 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000444 dxs CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002765 dxs CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003958 dxs CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000373 dxs CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003383 dxs CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007810 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000282 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001595 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000309 dxs CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003913 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001017 dxs CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003303 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008687 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002671 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290747 dxs CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004125 dxs CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061376 dxs CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000636 dxs CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000272 dxs CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002046 dxs CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005687 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145680 dxs CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000711 dxs CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004639 dxs CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002634 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000536 dxs CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004739 dxs CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001353 dxs CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001327 dxs CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005714 dxs CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004890 dxs CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004245 dxs CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004749 dxs CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006789 dxs CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008908 dxs CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004839 dxs CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006978 dxs CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002318 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002301 dxs CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003175 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005129 dxs CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006984 dxs CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004572 dxs CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006791 dxs CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106173 dxs CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084156 dxs CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000501 dxs CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091871 dxs CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009069 dxs CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005409 dxs CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006513 dxs CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004791 dxs CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265091 dxs CDS
Person Approved Go view Shigella boydii 227 ADV-0000341 dxs CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005737 dxs CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004963 dxs CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000340 dxs CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071328 dxs CDS
Person Approved Go view Shigella flexneri 301 ABT-0086717 dxs CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000402 dxs CDS
Person Approved Go view Shigella sonnei 046 ADD-0000428 dxs CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000953 VC0889 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000300 dxs CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001745 dxs CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002858 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009145 b0420 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001879 b0420 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000884 dxs CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000836 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235924 dxs CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007191 dxs CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003207 dxs CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006951 dxs CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000353 dxs CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126012 dxs CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007475 dxs CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006860 dxs CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003095 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005136 dxs CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004480 dxs CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030664 dxs CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007584 dxs CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001110 dxs CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003374 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005128 dxs CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007119 dxs CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000991 dxs CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001158 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003859 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0008986 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 433315 to 445177
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001437nrdRCDSforward433002433451Downstream
ABE-0001441ribDCDSforward433455434558Downstream
ABE-0001444ribECDSforward434647435117Downstream
ABE-0001447nusBCDSforward435137435556Downstream
ABE-0001452thiLCDSforward435634436611Downstream
ABE-0001454pgpACDSforward436589437107Downstream
ABE-0285362repeat_regionforward437120437156Downstream
ABE-0001457yajOCDScomplement437161438135Downstream
ABE-0001461dxsCDScomplement438315440177Matches
ABE-0001463ispACDScomplement440202441101Upstream
ABE-0001466xseBCDScomplement441101441343Upstream
ABE-0001470thiICDSforward441549442997Upstream
ABE-0285363repeat_regionforward443018443049Upstream
ABE-0001472yajLCDScomplement443051443641Upstream
ABE-0001474panECDScomplement443604444515Upstream
ABE-0001478yajQCDSforward444683445174Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.