Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001484 (cyoE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001484 showshow history
Names
cyoE JW0418 ECK0422 b0428
Product
protoheme IX farnesyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 446815 447705 891 297
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000179
EnteroFam0001484: Trusted threshold=809.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000537 (IPR000537 UbiA prenyltransferase family) Apr 2008
Automated Process Approved IPR006369 (IPR006369 Protohaem IX farnesyltransferase) Apr 2008
Automated Process Approved IPR011014 (IPR011014 Mechanosensitive ion channel MscS, transmembrane-2) Apr 2008
Automated Process Approved PF01040 (PF01040 UbiA prenyltransferase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0048034 heme O biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006369
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006783 heme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008495 protoheme IX farnesyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cyoE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0422 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0418 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0428 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product protoheme IX farnesyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name protoheme IX farnesyltransferase (haeme O biosynthesis) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name protohaeme IX farnesyltransferase (haeme O biosynthesis) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001484: Trusted threshold=809.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000179
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01040 UbiA prenyltransferase family Protein Sequence Similarity - PFAM Model Name: PF01040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Protein Sequence Similarity - InterPro Domain: IPR011014
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000537 UbiA prenyltransferase family Protein Sequence Similarity - InterPro Domain: IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006369 Protohaem IX farnesyltransferase Protein Sequence Similarity - InterPro Domain: IPR006369
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.5.-.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.5.1.- Published Annotation - Swiss-Prot Accession Number: P0AEA5 Feb 2006
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEA5 Published Annotation - Swiss-Prot Accession Number: P0AEA5 Jan 2006
Automated Process Approved db xref EcoGene:EG10182 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEA5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945073 Published Annotation - Entrez Gene Database ID: 945073
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001484 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786631 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note protoheme IX farnesyltransferase (haeme O biosynthesis); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73531.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0048034 heme O biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006369
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006783 heme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008495 protoheme IX farnesyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000179 cyoE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000732 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000418 cyoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000440 cyoE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000347 cyoE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001392 cyoE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003398 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001712 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129738 cyoE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105139 cyoE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104582 cyoE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000983 cyoE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003185 cyoE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001197 cyoE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001714 cyoE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008080 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017589 cyoE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001065 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001414 cyoE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299147 cyoE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001101 cyoE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002603 cyoE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000483 cyoE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008121 cyoE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000492 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006083 cyoE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000402 cyoE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003893 cyoE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009194 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008509 cyoE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006948 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076613 cyoE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000491 cyoE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000589 cyoE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006964 cyoE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009062 cyoE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000382 cyoE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004913 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002333 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010682 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008264 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009813 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007998 cyoE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005351 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008856 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009080 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008899 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007800 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007222 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008026 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006571 cyoE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024424 cyoE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008712 cyoE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005184 cyoE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000742 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000428 cyoE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000430 cyoE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000693 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000621 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000504 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000534 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174625 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000462 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000467 cyoE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130373 cyoE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005112 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000452 cyoE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002757 cyoE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003950 cyoE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000391 cyoE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003391 cyoE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007802 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000290 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001603 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000320 cyoE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003901 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001028 cyoE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003292 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008698 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002679 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290755 cyoE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004133 cyoE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061384 cyoE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000642 cyoE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000277 cyoE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002055 cyoE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005696 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145663 cyoE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001358 cyoE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004656 cyoE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002623 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000557 cyoE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004756 cyoE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001414 cyoE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001389 cyoE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005697 cyoE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004907 cyoE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004262 cyoE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004764 cyoE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006807 cyoE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008926 cyoE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004856 cyoE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006995 cyoE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002300 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002283 cyoE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003156 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005146 cyoE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006966 cyoE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004587 cyoE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006806 cyoE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106211 cyoE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084136 cyoE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000520 cyoE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091914 cyoE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009051 cyoE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005394 cyoE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006531 cyoE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004783 cyoE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268274 ctaB CDS
Person Approved Go view Shigella boydii 227 ADV-0000349 cyoE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005746 cyoE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004954 cyoE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071342 cyoE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086729 cyoE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000444 cyoE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001410 cyoE CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000308 cyoE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001725 cyoE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002848 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009122 cyoE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001867 cyoE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000876 cyoE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000844 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235946 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007181 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003198 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006942 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000362 cyoE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125974 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007484 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006869 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001846 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005127 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004489 cyoE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030674 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007593 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001122 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003365 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005137 cyoE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007109 cyoE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001000 cyoE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001167 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003851 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009034 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 441815 to 452705
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001470thiICDSforward441549442997Downstream
ABE-0285363repeat_regionforward443018443049Downstream
ABE-0001472yajLCDScomplement443051443641Downstream
ABE-0001474panECDScomplement443604444515Downstream
ABE-0001478yajQCDSforward444683445174Downstream
ABE-0285364repeat_regionforward445200445286Downstream
ABE-0001481yajRCDScomplement445302446666Downstream
ABE-0001484cyoECDScomplement446815447705Matches
ABE-0001487cyoDCDScomplement447717448046Upstream
ABE-0001491cyoCCDScomplement448046448660Upstream
ABE-0001493cyoBCDScomplement448650450641Upstream
ABE-0001495cyoACDScomplement450663451610Upstream
ABE-0001501ampGCDScomplement452070453545Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.