Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001487 (cyoD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001487 showshow history
Names
cyoD JW0419 ECK0423 b0429
Product
cytochrome o ubiquinol oxidase subunit IV
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 447717 448046 330 110
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000180
EnteroFam0001487: Trusted threshold=261.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014210 (IPR014210 Cytochrome o ubiquinol oxidase subunit IV) Apr 2008
Automated Process Approved IPR005171 (IPR005171 Cytochrome C oxidase subunit IV, prokaryotes) Apr 2008
Automated Process Approved PF03626 (PF03626 Prokaryotic Cytochrome C oxidase subunit IV) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015990 electron transport coupled proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008827 (DEPRECATED) cytochrome o ubiquinol oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cyoD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0419 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0423 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0429 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cytochrome o ubiquinol oxidase subunit IV Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001487: Trusted threshold=261.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000180
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014210 Cytochrome o ubiquinol oxidase subunit IV Protein Sequence Similarity - InterPro Domain: IPR014210
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03626 Prokaryotic Cytochrome C oxidase subunit IV Protein Sequence Similarity - PFAM Model Name: PF03626
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005171 Cytochrome C oxidase subunit IV, prokaryotes Protein Sequence Similarity - InterPro Domain: IPR005171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.10.3.- Published Annotation - Database Name: GenProtEC
Reference: Escherichia coli K-12 MG1655 		Feb 2007
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001487 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10181 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABJ6 Published Annotation - Swiss-Prot Accession Number: P0ABJ6 Jan 2006
Automated Process Approved db xref GeneID:944918 Published Annotation - Entrez Gene Database ID: 944918
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786632 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABJ6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73532.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015990 electron transport coupled proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008827 (DEPRECATED) cytochrome o ubiquinol oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000180 cyoD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000733 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001491 cyoD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001290 cyoD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000346 cyoD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001513 cyoD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003399 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001713 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129739 cyoD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104583 cyoD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000984 cyoD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003184 cyoD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001198 cyoD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001715 cyoD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008079 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017590 cyoD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001066 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001415 cyoD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299151 cyoD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001102 cyoD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002602 cyoD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000482 cyoD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008120 cyoD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000493 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006082 cyoD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000403 cyoD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003892 cyoD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009193 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008510 cyoD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006949 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076614 cyoD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000492 cyoD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000590 cyoD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006963 cyoD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009063 cyoD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000383 cyoD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004914 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002332 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010683 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008265 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009814 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007999 cyoD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005352 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008855 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009081 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008900 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007801 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007223 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008027 cyoD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006572 cyoD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024425 cyoD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008713 cyoD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005185 cyoD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000741 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000429 cyoD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000431 cyoD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000692 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000622 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000503 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000535 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174626 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000463 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000468 cyoD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130374 cyoD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005113 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000453 cyoD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002756 cyoD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003949 cyoD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000392 cyoD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003392 cyoD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007801 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000291 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001604 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000321 cyoD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003900 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001029 cyoD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003291 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008699 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002680 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290756 cyoD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004134 cyoD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061385 cyoD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000630 cyoD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000278 cyoD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002056 cyoD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005697 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145660 cyoD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001357 cyoD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004657 cyoD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002622 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000558 cyoD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004757 cyoD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001420 cyoD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001395 cyoD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005696 cyoD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004908 cyoD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004263 cyoD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004765 cyoD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006808 cyoD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008927 cyoD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004857 cyoD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006996 cyoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002299 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002282 cyoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003155 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005147 cyoD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006965 cyoD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004588 cyoD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006807 cyoD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106215 cyoD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084135 cyoD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000521 cyoD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091917 cyoD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009050 cyoD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005393 cyoD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006532 cyoD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004782 cyoD CDS
Person Approved Go view Shigella boydii 227 ADV-0000350 cyoD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005747 cyoD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004953 cyoD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071343 cyoD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086730 cyoD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000417 cyoD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000445 cyoD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001409 cyoD CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000307 cyoD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001724 cyoD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002847 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009118 cyoD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001866 cyoD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000875 cyoD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000845 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235956 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007180 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003197 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006941 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000363 cyoD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125970 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007485 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005126 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004490 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001123 cyoD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003364 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007108 cyoD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001001 cyoD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001168 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003850 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009036 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20170mutantTn5 InsertionRequest the StrainABE-0001487cyoDcyoD::Tn5KAN-2 at position 171 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 442717 to 453046
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001470thiICDSforward441549442997Downstream
ABE-0285363repeat_regionforward443018443049Downstream
ABE-0001472yajLCDScomplement443051443641Downstream
ABE-0001474panECDScomplement443604444515Downstream
ABE-0001478yajQCDSforward444683445174Downstream
ABE-0285364repeat_regionforward445200445286Downstream
ABE-0001481yajRCDScomplement445302446666Downstream
ABE-0001484cyoECDScomplement446815447705Downstream
ABE-0001487cyoDCDScomplement447717448046Matches
ABE-0001491cyoCCDScomplement448046448660Overlaps Upstream
ABE-0001493cyoBCDScomplement448650450641Upstream
ABE-0001495cyoACDScomplement450663451610Upstream
ABE-0001501ampGCDScomplement452070453545Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.