Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001491 (cyoC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001491 showshow history
Names
cyoC JW0420 ECK0424 b0430
Product
cytochrome o ubiquinol oxidase subunit III
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 448046 448660 615 205
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000181
EnteroFam0001491: Trusted threshold=551.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000298 (IPR000298 Cytochrome c oxidase subunit III-like) Apr 2008
Automated Process Approved IPR014206 (IPR014206 Cytochrome o ubiquinol oxidase, subunit III) Apr 2008
Automated Process Approved IPR024791 (IPR024791 Cytochrome c oxidase subunit III) Jul 2018
Automated Process Approved IPR035973 (IPR035973 Cytochrome c oxidase subunit III-like superfamily) Jul 2018
Automated Process Approved PF00510 (PF00510 Cytochrome c oxidase subunit III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0019646 aerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014206, IPR024791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008827 (DEPRECATED) cytochrome o ubiquinol oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014206
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0015002 (OBSOLETE) heme-copper terminal oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000298, IPR024791, IPR035973
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004129 cytochrome-c oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cyoC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0424 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0420 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0430 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cytochrome o ubiquinol oxidase subunit III Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name cytochrome o ubiquinol oxidase subunit III Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001491: Trusted threshold=551.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000181
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000298 Cytochrome c oxidase subunit III-like Protein Sequence Similarity - InterPro Domain: IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00510 Cytochrome c oxidase subunit III Protein Sequence Similarity - PFAM Model Name: PF00510
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035973 Cytochrome c oxidase subunit III-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035973
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024791 Cytochrome c oxidase subunit III Protein Sequence Similarity - InterPro Domain: IPR024791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014206 Cytochrome o ubiquinol oxidase, subunit III Protein Sequence Similarity - InterPro Domain: IPR014206
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.10.3.- Published Annotation - Swiss-Prot Accession Number: P0ABJ3 Feb 2006
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.D.4 (transport; Primary Active Transporters; Oxidoreduction-driven Active Transporters; The Proton-translocating Cytochrome Oxidase (COX) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.82 (transport; substrate; H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946897 Published Annotation - Entrez Gene Database ID: 946897
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABJ3 Published Annotation - Swiss-Prot Accession Number: P0ABJ3 Jan 2006
Automated Process Approved db xref GI:1786633 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABJ3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10180 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001491 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Aerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73533.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0019646 aerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014206, IPR024791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015002 (OBSOLETE) heme-copper terminal oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000298, IPR024791, IPR035973
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008827 (DEPRECATED) cytochrome o ubiquinol oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014206
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004129 cytochrome-c oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000298
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000181 cyoC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000734 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000484 cyoC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000636 cyoC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000272 cyoC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001365 cyoC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003400 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001714 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129740 cyoC CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105141 cyoC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104584 cyoC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000985 cyoC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003183 cyoC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001199 cyoC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001716 cyoC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008078 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017592 cyoC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001067 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001416 cyoC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299154 cyoC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001103 cyoC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002601 cyoC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000481 cyoC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008119 cyoC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000494 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006081 cyoC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000404 cyoC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003891 cyoC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009192 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008511 cyoC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006950 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076615 cyoC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000493 cyoC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000591 cyoC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006962 cyoC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009064 cyoC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000384 cyoC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004915 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002331 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010684 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008266 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009815 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008000 cyoC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005353 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008854 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009082 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008901 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007802 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007224 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008028 cyoC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006573 cyoC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024426 cyoC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008714 cyoC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005186 cyoC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000740 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000430 cyoC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000432 cyoC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000691 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000623 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000502 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000536 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174627 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000464 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000469 cyoC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130375 cyoC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005114 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000455 cyoC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002755 cyoC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003948 cyoC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000393 cyoC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003393 cyoC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007800 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000292 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001605 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000322 cyoC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003899 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001030 cyoC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003290 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008700 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002681 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290757 cyoC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004135 cyoC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061386 cyoC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000629 cyoC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000279 cyoC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002057 cyoC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005698 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145658 cyoC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001356 cyoC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004658 cyoC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002621 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000559 cyoC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004758 cyoC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001423 cyoC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001398 cyoC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005695 cyoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004909 cyoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004264 cyoC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004766 cyoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006809 cyoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008928 cyoC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004858 cyoC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006997 cyoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002298 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002281 cyoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003154 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005148 cyoC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006964 cyoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004589 cyoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006808 cyoC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106216 cyoC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084134 cyoC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000522 cyoC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091919 cyoC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009049 cyoC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005392 cyoC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006533 cyoC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004781 cyoC CDS
Person Approved Go view Shigella boydii 227 ADV-0000351 cyoC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005748 cyoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004952 cyoC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071344 cyoC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086731 cyoC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000418 cyoC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000446 cyoC CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000306 cyoC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001723 cyoC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002846 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009115 cyoC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001865 cyoC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000874 cyoC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000846 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235960 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007179 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003196 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006940 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000364 cyoC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125963 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007486 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006870 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001847 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005125 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004491 cyoC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030675 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007594 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001124 cyoC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003363 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005138 cyoC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007107 cyoC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001002 cyoC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001169 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003849 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009038 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20171mutantTn5 InsertionRequest the StrainABE-0001491cyoCcyoC::Tn5KAN-2 at position 544 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 443046 to 453660
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285363repeat_regionforward443018443049Downstream
ABE-0001472yajLCDScomplement443051443641Downstream
ABE-0001474panECDScomplement443604444515Downstream
ABE-0001478yajQCDSforward444683445174Downstream
ABE-0285364repeat_regionforward445200445286Downstream
ABE-0001481yajRCDScomplement445302446666Downstream
ABE-0001484cyoECDScomplement446815447705Downstream
ABE-0001487cyoDCDScomplement447717448046Overlaps Downstream
ABE-0001491cyoCCDScomplement448046448660Matches
ABE-0001493cyoBCDScomplement448650450641Overlaps Upstream
ABE-0001495cyoACDScomplement450663451610Upstream
ABE-0001501ampGCDScomplement452070453545Upstream
ABE-0001504yajGCDScomplement453589454167Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.