Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001501 (ampG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001501 showshow history
Names
ampG JW0423 ECK0427 b0433
Product
muropeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 452070 453545 1476 492
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000184
EnteroFam0001501: Trusted threshold=1212.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR004752 (IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1) Apr 2008
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ampG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0423 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0427 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0433 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product muropeptide transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name regulates beta-lactamase synthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name muropeptide transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001501: Trusted threshold=1212.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000184
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 Protein Sequence Similarity - InterPro Domain: IPR004752
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.34 (metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.128 (transport; substrate; muropeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946438 Published Annotation - Entrez Gene Database ID: 946438
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AE16 Published Annotation - Swiss-Prot Accession Number: P0AE16 Jan 2006
Automated Process Approved db xref GI:1786636 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AE16 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001501 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12183 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function regulator; Drug/analog sensitivity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note regulates beta-lactamase synthesis; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0000270 - peptidoglycan metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73536.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0000270 peptidoglycan metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000184 ampG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000737 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001943 ampG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001742 ampG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000697 ampG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001121 ampG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003403 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001717 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000988 ampG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003176 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001202 ampG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001719 ampG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008073 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017597 ampG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001070 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001419 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299167 ampG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001106 ampG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002598 ampG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000478 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000497 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006078 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000407 ampG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003888 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009187 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010600 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076618 ampG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000496 ampG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000594 ampG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000387 ampG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004918 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002327 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008269 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009818 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005356 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007805 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006576 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024429 ampG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010277 ampG_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005189 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000737 ampG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000433 ampG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000435 ampG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000688 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000626 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000499 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000539 ampG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174631 ampG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000467 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000473 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130378 ampG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005117 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000458 ampG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002752 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003945 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000397 ampG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003396 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007795 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000295 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001608 ampG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000325 ampG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003896 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001033 ampG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003287 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008703 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002684 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290760 ampG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004138 ampG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061389 ampG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000626 ampG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001515 ampG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002060 ampG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005702 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145650 ampG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004662 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002617 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000562 ampG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004762 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001437 ampG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001411 ampG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005691 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004913 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004268 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008932 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004862 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007001 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002295 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002278 ampG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003150 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005152 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006960 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004593 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006812 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106222 ampG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084131 ampG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000525 ampG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091932 ampG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009045 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005389 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006537 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004778 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267456 CDS
Person Approved Go view Shigella boydii 227 ADV-0000354 ampG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005751 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004949 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000329 ampG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071353 ampG CDS
Person Approved Go view Shigella flexneri 301 ABT-0086735 ampG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000427 ampG CDS
Person Approved Go view Shigella sonnei 046 ADD-0000449 ampG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001715 ampG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002842 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009099 ampG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001861 ampG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000870 ampG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000850 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235986 ampG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007175 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003190 ampG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006936 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000368 ampG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125925 ampG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007490 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006874 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005121 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004495 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030679 ampG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007598 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001130 ampG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003356 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005142 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007103 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001006 ampG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001175 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003842 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009056 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20173mutantTn5 InsertionRequest the StrainABE-0001501ampGampG::Tn5KAN-2 at position 490 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 447070 to 458545
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001484cyoECDScomplement446815447705Downstream
ABE-0001487cyoDCDScomplement447717448046Downstream
ABE-0001491cyoCCDScomplement448046448660Downstream
ABE-0001493cyoBCDScomplement448650450641Downstream
ABE-0001495cyoACDScomplement450663451610Downstream
ABE-0001501ampGCDScomplement452070453545Matches
ABE-0001504yajGCDScomplement453589454167Upstream
ABE-0001508bolACDSforward454472454789Upstream
ABE-0001511tigCDSforward455133456431Upstream
ABE-0001515clpPCDSforward456677457300Upstream
ABE-0001517clpXCDSforward457426458700Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.