Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001566 (tesB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001566 showshow history
Names
tesB JW0442 ECK0446 b0452
Product
acyl-CoA thioesterase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 474301 475161 861 287
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000199
EnteroFam0001566: Trusted threshold=774.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003703 (IPR003703 Acyl-CoA thioesterase) Apr 2008
Automated Process Approved IPR029069 (IPR029069 HotDog domain superfamily) Jul 2018
Automated Process Approved PF13622 (PF13622 Thioesterase-like superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006637 acyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003703
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0047617 acyl-CoA hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003703
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016291 (DEPRECATED) acyl-CoA thioesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003703
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tesB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0446 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0442 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0452 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acyl-CoA thioesterase II Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001566: Trusted threshold=774.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000199
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029069 HotDog domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029069
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003703 Acyl-CoA thioesterase Protein Sequence Similarity - InterPro Domain: IPR003703
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13622 Thioesterase-like superfamily Protein Sequence Similarity - PFAM Model Name: PF13622
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.1.2.20 Published Annotation - Database Name: EC2GO: GO:0047617
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.2.- Published Annotation - Swiss-Prot Accession Number: P0AGG2 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10995 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGG2 Published Annotation - Swiss-Prot Accession Number: P0AGG2 Jan 2006
Automated Process Approved db xref GeneID:945074 Published Annotation - Entrez Gene Database ID: 945074
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786657 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGG2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001566 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC73555.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1C8U wt, whole, co-crystallized with lauryl dimethylamine-N-oxide: 1.90A; X-ray diffraction. Experimental - PubMed ID: 10876240
Reference: Escherichia coli K-12 		Apr 2008
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006637 acyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003703
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016291 (DEPRECATED) acyl-CoA thioesterase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003703
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0047617 acyl-CoA hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003703
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000199 tesB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000751 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001140 tesB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001126 tesB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001446 tesB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001005 tesB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003420 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001738 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001009 tesB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003156 tesB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001223 tesB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001740 tesB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008052 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019544 tesB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001087 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001441 tesB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299253 tesB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001130 tesB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002576 tesB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000456 tesB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006642 tesB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000517 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006057 tesB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000426 tesB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003866 tesB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009143 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008699 tesB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076646 tesB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000518 tesB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000615 tesB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006038 tesB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007932 tesB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000406 tesB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004938 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001542 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010711 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008293 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005557 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006054 tesB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005380 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009722 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009113 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006504 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007829 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005996 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005767 tesB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006601 tesB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024448 tesB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008861 tesB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005210 tesB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000716 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000452 tesB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000454 tesB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000667 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000647 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000593 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000564 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000487 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000495 tesB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130397 tesB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005140 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000481 tesB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002732 tesB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003923 tesB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000417 tesB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003416 tesB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005535 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000316 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001629 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000344 tesB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003878 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001051 tesB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003269 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008723 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002705 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290780 tesB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004159 tesB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061407 tesB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003189 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003631 tesB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002082 tesB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005725 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145599 tesB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004736 tesB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004683 tesB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002593 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000584 tesB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004784 tesB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001515 tesB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001482 tesB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005669 tesB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004933 tesB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004289 tesB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007753 tesB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005911 tesB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008954 tesB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004884 tesB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007023 tesB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002275 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002258 tesB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003124 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005172 tesB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006939 tesB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004614 tesB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006833 tesB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106281 tesB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084110 tesB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000549 tesB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091994 tesB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009023 tesB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005366 tesB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004848 tesB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004757 tesB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265491 tesB CDS
Person Approved Go view Shigella boydii 227 ADV-0000374 tesB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005775 tesB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005140 tesB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000434 tesB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071372 tesB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086755 tesB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000445 tesB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000476 tesB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001131 VC1063 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001665 tesB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002539 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009026 tesB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001841 tesB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000850 tesB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001361 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236050 tesB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007154 tesB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003166 tesB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006916 tesB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000389 tesB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125843 tesB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007510 tesB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007930 tesB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002411 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005101 tesB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004515 tesB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030699 tesB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007618 tesB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001155 tesB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003331 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005166 tesB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007083 tesB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001027 tesB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001202 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003816 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009157 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001519 tesB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20181mutantTn5 InsertionRequest the StrainABE-0001566tesBtesB::Tn5KAN-2 at position 640 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 469301 to 480161
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001555mdlACDSforward468871470643Downstream
ABE-0001557mdlBCDSforward470636472417Downstream
ABE-0001562glnKCDSforward472598472936Downstream
ABE-0001564amtBCDSforward472966474252Downstream
ABE-0285366repeat_regionforward474271474293Downstream
ABE-0001566tesBCDScomplement474301475161Matches
ABE-0001574ybaYCDSforward475379475951Upstream
ABE-0001576ybaZCDScomplement475982476371Upstream
ABE-0001579ffsncRNAforward476448476561Upstream
ABE-0001582ybaACDSforward476672477025Upstream
ABE-0001584pdeBCDScomplement477067478617Upstream
ABE-0001587ylaCCDScomplement478781479251Upstream
ABE-0001591maaCDScomplement479367479918Upstream
ABE-0001594hhaCDScomplement480090480308Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.