Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001603 (acrA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001603 showshow history
Names
acrA ECK0457 JW0452 nbsA sipB mtcA lir Mb mbl b0463
Product
multidrug efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 484426 485619 1194 398
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006143 (IPR006143 RND efflux pump, membrane fusion protein) Apr 2008
Automated Process Approved IPR032317 (IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain) Jul 2018
Automated Process Approved PF00529 (PF00529 Cation efflux system protein CusB domain 1) Jul 2018
Automated Process Approved PF16576 (PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009306 protein secretion GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acrA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym Mb Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym lir Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym mtcA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0457 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nbsA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0452 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym sipB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym mbl Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0463 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product multidrug efflux system Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name component of acridine efflux pump Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acridine efflux pump Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF00529 Cation efflux system protein CusB domain 1 Protein Sequence Similarity - PFAM Model Name: PF00529
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Protein Sequence Similarity - PFAM Model Name: PF16576
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Protein Sequence Similarity - InterPro Domain: IPR032317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006143 RND efflux pump, membrane fusion protein Protein Sequence Similarity - InterPro Domain: IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.6 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Resistance-Nodulation-Cell Division (RND) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.83 (transport; substrate; H+/acridine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11703 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945112 Published Annotation - Entrez Gene Database ID: 945112
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AE06 Published Annotation - Swiss-Prot Accession Number: P0AE06 Jan 2006
Automated Process Approved db xref ASAP:ABE-0001603 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AE06 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786668 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Drug/analog sensitivity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acridine efflux pump; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73565.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 8.60
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009306 protein secretion GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000756 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001238 acrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000914 acrA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000949 acrA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001228 acrA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003426 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001746 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001038 acrA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000808 bpeA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001239 acrA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001757 acrA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008041 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019532 acrA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001095 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001462 bpeA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299277 acrA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001142 acrA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002563 acrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000444 acrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006631 acrA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000528 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006046 acrA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000435 acrA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003856 acrA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009129 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008688 acrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007794 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076656 acrA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000529 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000626 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006027 acrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007921 acrA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000419 acrA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004947 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001553 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010723 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008305 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005569 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006042 acrA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005392 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009734 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009124 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006516 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007841 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005984 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005779 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006613 acrA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024459 acrA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008872 acrA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005221 acrA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000693 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000461 acrA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000465 acrA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000657 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000657 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000603 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000574 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174665 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000497 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000505 acrA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130408 acrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005150 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000491 acrA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002715 acrA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003913 acrA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000446 acrA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003432 acrA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005542 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000329 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001642 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000355 acrA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003866 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001064 acrA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003257 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008735 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002717 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290795 acrA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004170 acrA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061416 acrA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000651 acrA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001525 acrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002090 acrA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005734 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004377 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004695 acrA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002580 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000602 acrA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004796 acrA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001544 acrA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001511 acrA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005656 acrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004945 acrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004301 acrA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007765 acrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005923 acrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008966 acrA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004896 acrA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007035 acrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002262 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002246 acrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003112 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005184 acrA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006284 acrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004626 acrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006845 acrA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106304 acrA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084098 acrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000561 acrA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092028 acrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009011 acrA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005354 acrA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004860 acrA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004744 acrA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268353 CDS
Person Approved Go view Shigella boydii 227 ADV-0000393 acrA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005790 acrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005199 acrA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000508 acrA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071385 acrA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086766 acrA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000456 acrA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000486 acrA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001652 acrA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002551 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008985 acrA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001826 acrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000841 acrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001372 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236072 acrA3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006995 acrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003153 acrA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006907 acrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000398 acrA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125813 acrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007519 acrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007938 acrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001754 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005091 acrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004525 acrA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030707 acrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007628 acrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001167 acrA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003318 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005173 acrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007073 acrA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001037 acrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001213 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003803 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009334 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001567 acrA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 479426 to 490619
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001591maaCDScomplement479367479918Downstream
ABE-0001594hhaCDScomplement480090480308Downstream
ABE-0001596tomBCDScomplement480334480708Downstream
ABE-0001601acrBCDScomplement481254484403Downstream
ABE-0001603acrACDScomplement484426485619Matches
ABE-0001608acrRCDSforward485761486408Upstream
ABE-0001613mscKCDSforward486536489898Upstream
ABE-0285367repeat_regionforward489959490056Upstream
ABE-0001616ybaMCDScomplement490110490271Upstream
ABE-0001619priCCDScomplement490285490812Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.