Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001628 (apt) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001628 showshow history
Names
apt JW0458 ECK0463 b0469
Product
adenine phosphoribosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 491412 491963 552 184
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000206
EnteroFam0001628: Trusted threshold=462.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005764 (IPR005764 Adenine phosphoribosyl transferase) Apr 2008
Automated Process Approved IPR000836 (IPR000836 Phosphoribosyltransferase domain) Apr 2008
Automated Process Approved IPR002375 (IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site) Apr 2008
Automated Process Approved IPR029057 (IPR029057 Phosphoribosyltransferase-like) Jul 2018
Automated Process Approved PF00156 (PF00156 Phosphoribosyl transferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006168 adenine salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003999 adenine phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name apt Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0463 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0458 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0469 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product adenine phosphoribosyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name adenine phosphoribosyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001628: Trusted threshold=462.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000206
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005764 Adenine phosphoribosyl transferase Protein Sequence Similarity - InterPro Domain: IPR005764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00156 Phosphoribosyl transferase domain Protein Sequence Similarity - PFAM Model Name: PF00156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029057 Phosphoribosyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR029057
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002375 (DEPRECATED) Purine/pyrimidine phosphoribosyl transferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000836 Phosphoribosyltransferase domain Protein Sequence Similarity - InterPro Domain: IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.4.2.7 Published Annotation - Swiss-Prot Accession Number: P69503 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945113 Published Annotation - Entrez Gene Database ID: 945113
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001628 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69503 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10051 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69503 Published Annotation - Swiss-Prot Accession Number: P69503 Jan 2006
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73571.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006168 adenine salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002375
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003999 adenine phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000206 apt CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000758 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000599 apt CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000571 apt CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000578 apt CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000448 apt CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003431 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001751 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001044 apt CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000814 apt CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001245 apt CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001763 apt CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008033 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019521 apt CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001102 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001468 apt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299296 apt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001148 apt CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002558 apt CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000437 apt CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006625 apt CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000534 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006040 apt CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000440 apt CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003850 apt CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009122 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008682 apt CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007788 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076663 apt CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000535 apt CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000634 apt CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006021 apt CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007915 apt CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000425 apt CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004956 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001561 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010729 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008311 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005575 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006036 apt CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005398 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009740 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009130 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006522 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007847 apt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005978 apt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005785 apt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006619 apt CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024465 apt CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008878 apt CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005228 apt CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000686 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000467 apt CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000471 apt CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000649 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000665 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000611 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000580 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174672 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000503 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000511 apt CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130414 apt CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005158 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000497 apt CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002709 apt CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003904 apt CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000453 apt CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003438 apt CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005552 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000335 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001648 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000360 apt CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003861 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001069 apt CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003252 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008741 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002723 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290800 apt CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004176 apt CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061421 apt CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000652 apt CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000291 apt CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002095 apt CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005741 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145569 apt CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002028 apt CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004705 apt CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002571 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000610 apt CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004803 apt CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001566 apt CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001534 apt CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005649 apt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004953 apt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004310 apt CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007772 apt CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005930 apt CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008973 apt CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004903 apt CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007042 apt CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002255 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002239 apt CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003103 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005191 apt CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006276 apt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004633 apt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006852 apt CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106318 apt CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084091 apt CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000569 apt CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092042 apt CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009003 apt CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005346 apt CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004867 apt CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004737 apt CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265591 apt CDS
Person Approved Go view Shigella boydii 227 ADV-0000399 apt CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005796 apt CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005188 apt CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000502 apt CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071392 apt CDS
Person Approved Go view Shigella flexneri 301 ABT-0086772 apt CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000462 apt CDS
Person Approved Go view Shigella sonnei 046 ADD-0000492 apt CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001121 VC1053 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001640 apt CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002558 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008971 apt CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001819 apt CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000834 apt CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001379 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236097 apt CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007003 apt CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003141 apt CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006899 apt CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000404 apt CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125778 apt CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007527 apt CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007949 apt CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002484 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005080 apt CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004533 apt CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030716 apt CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008773 apt CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001177 apt CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003310 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005184 apt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007066 apt CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001044 apt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001223 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003794 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009353 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001573 apt CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20182mutantTn5 InsertionRequest the StrainABE-0001628aptapt::Tn5KAN-2 at position 421 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 486412 to 496963
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001613mscKCDSforward486536489898Upstream
ABE-0285367repeat_regionforward489959490056Upstream
ABE-0001616ybaMCDScomplement490110490271Upstream
ABE-0001619priCCDScomplement490285490812Upstream
ABE-0001625ybaNCDSforward490882491259Upstream
ABE-0001628aptCDSforward491412491963Matches
ABE-0001633dnaXCDSforward492092494023Downstream
ABE-0001636ybaBCDSforward494076494405Downstream
ABE-0001638recRCDSforward494405495010Downstream
ABE-0001642htpGCDSforward495120496994Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.