Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001645 (adk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001645 showshow history
Names
adk JW0463 ECK0468 plsA dnaW b0474
Product
adenylate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 497175 497819 645 215
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000211
EnteroFam0001645: Trusted threshold=608.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006259 (IPR006259 Adenylate kinase subfamily) Apr 2008
Automated Process Approved IPR011769 (IPR011769 (DEPRECATED) Adenylate/cytidine kinase, N-terminal) Apr 2008
Automated Process Approved IPR000850 (IPR000850 Adenylate kinase/UMP-CMP kinase) Apr 2008
Automated Process Approved IPR007862 (IPR007862 Adenylate kinase, active site lid domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF05191 (PF05191 Adenylate kinase, active site lid) Jul 2018
Automated Process Approved PF00406 (PF00406 Adenylate kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0019205 nucleobase-containing compound kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004017 adenylate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016776 phosphotransferase activity, phosphate group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0019201 (DEPRECATED) nucleotide kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name adk Experimental - PubMed ID: 7814329
Reference: Salmonella Typhimurium LT2 		Sep 2007
Person Approved synonym ECK0468 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0463 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym plsA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym dnaW Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0474 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product adenylate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001645: Trusted threshold=608.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000211
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000850 Adenylate kinase/UMP-CMP kinase Protein Sequence Similarity - InterPro Domain: IPR000850
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF05191 Adenylate kinase, active site lid Protein Sequence Similarity - PFAM Model Name: PF05191
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007862 Adenylate kinase, active site lid domain Protein Sequence Similarity - InterPro Domain: IPR007862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00406 Adenylate kinase Protein Sequence Similarity - PFAM Model Name: PF00406
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006259 Adenylate kinase subfamily Protein Sequence Similarity - InterPro Domain: IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011769 (DEPRECATED) Adenylate/cytidine kinase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR011769
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.7.4.- Published Annotation - Database Name: EC2GO: GO:0016776
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.4.3 Published Annotation - Swiss-Prot Accession Number: P69441 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.3 (metabolism; building block biosynthesis; nucleotide; purine ribonucleotide biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10032 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945097 Published Annotation - Entrez Gene Database ID: 945097
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P69441 Published Annotation - Swiss-Prot Accession Number: P69441 Jan 2006
Automated Process Approved db xref ASAP:ABE-0001645 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69441 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786680 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73576.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0019201 (DEPRECATED) nucleotide kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0019205 nucleobase-containing compound kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004017 adenylate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007862
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016776 phosphotransferase activity, phosphate group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006259
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000211 adk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001424 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000206 adk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000326 adk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000177 adk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000954 adk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003436 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004655 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129754 adk CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105154 adk CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104599 adk CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001052 adk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000822 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001250 adk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001768 adk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008028 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019513 adk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001108 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001473 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299327 adk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001158 adk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002548 adk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000432 adk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006619 adk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000539 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006034 adk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000445 adk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003845 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009117 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008675 adk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007782 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076669 adk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000540 adk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000639 adk CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006015 adk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007909 adk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000430 adk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004962 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001567 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010736 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008318 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005582 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006029 adk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005405 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007181 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009137 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006528 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007854 adk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005971 adk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005791 adk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006626 adk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024470 adk CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008884 adk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005233 adk CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000472 adk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000476 adk CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000585 adk CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174677 adk CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000508 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000517 adk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130419 adk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005164 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000503 adk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002699 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003894 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000458 adk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003443 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005558 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000342 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001655 adk CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000366 adk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003855 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001076 adk CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003247 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008749 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002731 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290805 adk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004182 adk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061426 adk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000648 adk CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000294 adk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002101 adk CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005746 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145560 adk CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001539 adk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004711 adk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002566 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000616 adk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004810 adk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001582 adk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001550 adk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005643 adk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004959 adk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004316 adk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007778 adk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005936 adk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008979 adk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004909 adk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007048 adk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002250 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002234 adk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003094 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005197 adk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006270 adk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004640 adk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106332 adk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084086 adk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000575 adk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092053 adk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008997 adk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005340 adk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004873 adk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004732 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265597 adk CDS
Person Approved Go view Shigella boydii 227 ADV-0000404 adk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005802 adk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005182 adk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000497 adk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071397 adk CDS
Person Approved Go view Shigella flexneri 301 ABT-0086777 adk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000467 adk CDS
Person Approved Go view Shigella sonnei 046 ADD-0000497 adk CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001054 VC0986 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000052 adk CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001629 adk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002563 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008955 adk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001814 adk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000827 adk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001384 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236103 adk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007009 adk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003135 adk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006893 adk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000409 adk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125763 adk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007533 adk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007955 adk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002138 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005074 adk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004539 adk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030722 adk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008779 adk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001183 adk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003304 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005190 adk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007060 adk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001049 adk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001228 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003789 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009385 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001580 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 492175 to 502819
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001633dnaXCDSforward492092494023Upstream
ABE-0001636ybaBCDSforward494076494405Upstream
ABE-0001638recRCDSforward494405495010Upstream
ABE-0001642htpGCDSforward495120496994Upstream
ABE-0285368repeat_regionforward497001497026Upstream
ABE-0001645adkCDSforward497175497819Matches
ABE-0285369repeat_regionforward497916497933Downstream
ABE-0001649hemHCDSforward498055499017Downstream
ABE-0001651aesCDScomplement499014499973Downstream
ABE-0001655gskCDSforward500125501429Downstream
ABE-0285370repeat_regionforward501444501527Downstream
ABE-0001658ybaLCDScomplement501562503238Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.