Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001649 (hemH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001649 showshow history
Names
hemH JW0464 ECK0469 visA popA b0475
Product
ferrochelatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 498055 499017 963 321
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000212
EnteroFam0001649: Trusted threshold=832.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001015 (IPR001015 Ferrochelatase) Apr 2008
Automated Process Approved PF00762 (PF00762 Ferrochelatase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006783 heme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001015
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004325 ferrochelatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001015
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hemH Experimental - PubMed ID: 1317844
Reference: Salmonella Typhimurium LT2 		Sep 2007
Person Approved synonym visA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0464 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym popA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0469 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0475 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ferrochelatase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001649: Trusted threshold=832.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000212
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001015 Ferrochelatase Protein Sequence Similarity - InterPro Domain: IPR001015
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00762 Ferrochelatase Protein Sequence Similarity - PFAM Model Name: PF00762
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.99.1.1 Published Annotation - Swiss-Prot Accession Number: P23871 Feb 2006
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10431 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786681 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23871 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23871 Published Annotation - Swiss-Prot Accession Number: P23871 Jan 2005
Automated Process Approved db xref ASAP:ABE-0001649 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947532 Published Annotation - Entrez Gene Database ID: 947532
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ferrochelatase: final enzyme of heme biosynthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73577.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006783 heme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001015
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004325 ferrochelatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001015
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000212 hemH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001423 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000401 hemH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000351 hemH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000408 hemH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000265 hemH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003437 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004654 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001053 hemH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000823 hemH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001251 hemH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001769 hemH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008027 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019511 hemH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001109 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001474 hemH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299331 hemH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001159 hemH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002547 hemH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000431 hemH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006618 hemH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000540 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006033 hemH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000446 hemH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003844 hemH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009116 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008674 hemH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007781 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076670 hemH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000541 hemH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000640 hemH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006014 hemH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007908 hemH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000431 hemH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004963 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001568 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010737 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008319 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005583 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006028 hemH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005406 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007182 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009138 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006529 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007855 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005970 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005792 hemH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006627 hemH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024472 hemH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008885 hemH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005234 hemH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000473 hemH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000477 hemH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000642 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000672 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000618 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000586 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174678 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000509 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000518 hemH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130420 hemH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005165 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000504 hemH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002697 hemH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003893 hemH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003444 hemH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005559 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000343 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001656 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001664 hemH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002381 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002400 hemH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001760 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008750 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002027 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287214 hemH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004183 hemH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061427 hemH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000655 hemH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000295 hemH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002102 hemH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005747 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145557 hemH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001157 hemH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004713 hemH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002565 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000619 hemH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004812 hemH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001586 hemH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001554 hemH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005641 hemH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004961 hemH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004318 hemH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007779 hemH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005938 hemH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008981 hemH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004911 hemH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007050 hemH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002249 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002233 hemH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003092 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005199 hemH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006268 hemH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004641 hemH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008184 hemH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106335 hemH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084085 hemH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000577 hemH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092056 hemH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008995 hemH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005338 hemH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004875 hemH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004728 hemH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265598 hemH-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0000405 hemH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005803 hemH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005181 hemH CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000496 hemH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071398 hemH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086778 hemH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000468 hemH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000498 hemH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001055 VC0987 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000053 hemH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001626 hemH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002564 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008952 hemH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001813 hemH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000826 hemH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001385 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236105 hemH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007010 hemH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003134 hemH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006892 hemH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000410 hemH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125760 hemH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007534 hemH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007956 hemH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002140 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005073 hemH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004540 hemH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030723 hemH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008780 hemH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001184 hemH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003303 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005191 hemH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007059 hemH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001050 hemH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001229 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003788 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009390 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001581 hemH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 493055 to 504017
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001633dnaXCDSforward492092494023Upstream
ABE-0001636ybaBCDSforward494076494405Upstream
ABE-0001638recRCDSforward494405495010Upstream
ABE-0001642htpGCDSforward495120496994Upstream
ABE-0285368repeat_regionforward497001497026Upstream
ABE-0001645adkCDSforward497175497819Upstream
ABE-0285369repeat_regionforward497916497933Upstream
ABE-0001649hemHCDSforward498055499017Matches
ABE-0001651aesCDScomplement499014499973Overlaps Downstream
ABE-0001655gskCDSforward500125501429Downstream
ABE-0285370repeat_regionforward501444501527Downstream
ABE-0001658ybaLCDScomplement501562503238Downstream
ABE-0001661fsrCDScomplement503476504696Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.