Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001655 (gsk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001655 showshow history
Names
gsk JW0466 ECK0471 b0477
Product
inosine/guanosine kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 500125 501429 1305 435
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011611 (IPR011611 Carbohydrate kinase PfkB) Apr 2008
Automated Process Approved IPR002173 (IPR002173 Carbohydrate/purine kinase, PfkB, conserved site) Apr 2008
Automated Process Approved IPR029056 (IPR029056 Ribokinase-like) Jul 2018
Automated Process Approved PF00294 (PF00294 pfkB family carbohydrate kinase) Jul 2018
Automated Process Uncurated GH28 (GH28 Glycoside Hydrolase Family 28) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gsk Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0471 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0466 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0477 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product inosine/guanosine kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name inosine-guanosine kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011611 Carbohydrate kinase PfkB Protein Sequence Similarity - InterPro Domain: IPR011611
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002173 Carbohydrate/purine kinase, PfkB, conserved site Protein Sequence Similarity - InterPro Domain: IPR002173
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH28 Glycoside Hydrolase Family 28 Protein Sequence Similarity - CAZy Model Name: GH28
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029056 Ribokinase-like Protein Sequence Similarity - InterPro Domain: IPR029056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00294 pfkB family carbohydrate kinase Protein Sequence Similarity - PFAM Model Name: PF00294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.73 Published Annotation - Swiss-Prot Accession Number: P0AEW6 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786684 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11102 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001655 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946584 Published Annotation - Entrez Gene Database ID: 946584
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEW6 Published Annotation - Swiss-Prot Accession Number: P0AEW6 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEW6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note inosine-guanosine kinase; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73579.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005372 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001778 gsk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001761 gsk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001816 gsk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001814 gsk CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001054 gsk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000825 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001253 gsk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001771 gsk CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001475 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299334 gsk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001160 gsk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002546 gsk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000428 gsk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006616 gsk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000542 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006031 gsk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000448 gsk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003842 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009114 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008672 gsk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007779 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076672 gsk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000543 gsk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000642 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006012 gsk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007906 gsk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000433 gsk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004965 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001570 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010739 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008321 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005585 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006026 gsk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005408 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007184 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009140 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006531 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007857 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005968 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005794 gsk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006629 gsk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024474 gsk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008887 gsk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005236 gsk CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000678 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000475 gsk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000479 gsk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000640 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000674 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000620 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000588 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174680 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000511 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000520 gsk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130422 gsk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005167 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000506 gsk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002696 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003892 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000460 gsk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003445 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000344 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001657 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000367 gsk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003854 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001077 gsk CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003246 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008751 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002733 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290808 gsk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004184 gsk CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145554 gsk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004715 gsk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002563 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000621 gsk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004814 gsk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001592 gsk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001559 gsk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005639 gsk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004963 gsk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004321 gsk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007781 gsk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005940 gsk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008983 gsk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004913 gsk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007052 gsk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002247 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002231 gsk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003090 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005201 gsk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006266 gsk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004643 gsk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008186 gsk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106340 gsk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084083 gsk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000579 gsk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092060 gsk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008993 gsk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005336 gsk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004727 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265599 gsk CDS
Person Approved Go view Shigella boydii 227 ADV-0000407 gsk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005805 gsk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005179 gsk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000494 gsk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071400 gsk CDS
Person Approved Go view Shigella flexneri 301 ABT-0086780 gsk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000470 gsk CDS
Person Approved Go view Shigella sonnei 046 ADD-0000500 gsk CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001621 gsk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001349 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008908 gsk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001808 gsk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000821 gsk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001409 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236138 gsk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005366 gsk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003112 gsk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008477 gsk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000423 gsk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125704 gsk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007555 gsk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007977 gsk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002356 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005054 gsk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004560 gsk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030742 gsk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008800 gsk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001208 gsk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003282 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005210 gsk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007041 gsk CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001068 gsk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001252 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003769 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009398 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001582 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 495125 to 506429
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001642htpGCDSforward495120496994Upstream
ABE-0285368repeat_regionforward497001497026Upstream
ABE-0001645adkCDSforward497175497819Upstream
ABE-0285369repeat_regionforward497916497933Upstream
ABE-0001649hemHCDSforward498055499017Upstream
ABE-0001651aesCDScomplement499014499973Upstream
ABE-0001655gskCDSforward500125501429Matches
ABE-0285370repeat_regionforward501444501527Downstream
ABE-0001658ybaLCDScomplement501562503238Downstream
ABE-0001661fsrCDScomplement503476504696Downstream
ABE-0001668ushACDSforward504914506566Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.