Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001668 (ushA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001668 showshow history
Names
ushA JW0469 ECK0474 b0480
Product
5'-nucleotidase/UDP-sugar hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 504914 506566 1653 551
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006179 (IPR006179 5'-Nucleotidase/apyrase) Apr 2008
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Apr 2008
Automated Process Approved IPR008334 (IPR008334 5'-Nucleotidase, C-terminal) Apr 2008
Automated Process Approved IPR006146 (IPR006146 5'-Nucleotidase, conserved site) Apr 2008
Automated Process Approved IPR036907 (IPR036907 5'-Nucleotidase, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00149 (PF00149 Calcineurin-like phosphoesterase) Jul 2018
Automated Process Approved PF02872 (PF02872 5'-nucleotidase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ushA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0474 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0469 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0480 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 5'-nucleotidase/UDP-sugar hydrolase Experimental - PubMed ID: 5337593
Reference: Escherichia coli ATCC 12793 		Jul 2008
Automated Process Approved alternate product name bifunctional UDP-sugar hydrolase/5'-nucleotidase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name UDP-sugar hydrolase 5'-nucleotidase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name UDP-sugar hydrolase (5'-nucleotidase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF02872 5'-nucleotidase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02872
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008334 5'-Nucleotidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008334
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006179 5'-Nucleotidase/apyrase Protein Sequence Similarity - InterPro Domain: IPR006179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00149 Calcineurin-like phosphoesterase Protein Sequence Similarity - PFAM Model Name: PF00149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036907 5'-Nucleotidase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036907
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006146 5'-Nucleotidase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.5 Published Annotation - Swiss-Prot Accession Number: P07024 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.6.1.45 Published Annotation - Swiss-Prot Accession Number: P07024 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.10 (metabolism; central intermediary metabolism; sugar nucleotide biosynthesis, conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786687 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07024 Published Annotation - Swiss-Prot Accession Number: P07024 Jan 2005
Automated Process Approved db xref GeneID:947331 Published Annotation - Entrez Gene Database ID: 947331
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07024 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001668 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11060 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note UDP-sugar hydrolase (5'-nucleotidase); GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009226 - nucleotide-sugar biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73582.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000187 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001961 ushA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001631 ushA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002872 ushA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001652 ushA CDS
Paralog
Person Uncurated Go view Shigella flexneri plasmid pWR100 ACT-0247372 ushA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003439 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004652 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001057 ushA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000828 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001256 ushA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001774 ushA_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008024 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0046959 ushA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001111 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001478 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299345 ushA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001165 ushA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002543 ushA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000425 ushA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006613 ushA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000545 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006028 ushA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000451 ushA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003839 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009110 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008669 ushA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007776 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076675 ushA CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000547 ushA pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000645 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006009 ushA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007903 ushA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000436 ushA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004968 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001573 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010742 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008324 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005588 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006023 ushA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005411 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007187 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009143 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006534 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007860 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005965 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005797 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006632 ushA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024477 ushA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008890 mggB_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005239 ushA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000675 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000478 ushA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000482 ushA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000636 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000678 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000624 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000592 ushA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000514 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000523 ushA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130425 ushA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005170 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000509 ushA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003888 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000463 ushA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003448 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005561 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000347 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003014 ushA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000369 ushA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003852 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001079 ushA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003244 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008754 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002736 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290810 ushA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004186 ushA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061430 ushA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000653 ushA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000296 ushA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001079 ushA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005749 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145542 ushA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004718 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002559 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000624 ushA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004818 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001603 ushA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001570 ushA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004966 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004324 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007785 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005943 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008986 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004917 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007055 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002244 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002228 ushA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003086 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005205 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006262 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004647 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008190 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000583 ushA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092067 ushA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005332 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004882 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004724 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265580 ushA CDS
Person Approved Go view Shigella boydii 227 ADV-0000413 ushA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005811 ushA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071404 ushA CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0086783 ushA CDS
Automated Process Uncurated Go view Shigella flexneri plasmid pWR100 ACT-0247372 ushA CDS
Person Uncurated Go view Shigella flexneri plasmid pWR501 ACS-0247096 ushA CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0000506 ushA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002250 VC2174 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001613 ushA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001352 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008894 ushA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001805 ushA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000818 ushA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001545 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007038 ushA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001071 pseudogene
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009411 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001585 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 499914 to 511566
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001651aesCDScomplement499014499973Upstream
ABE-0001655gskCDSforward500125501429Upstream
ABE-0285370repeat_regionforward501444501527Upstream
ABE-0001658ybaLCDScomplement501562503238Upstream
ABE-0001661fsrCDScomplement503476504696Upstream
ABE-0001668ushACDSforward504914506566Matches
ABE-0285371repeat_regionforward506576506595Downstream
ABE-0001670ybaKCDScomplement506603507082Downstream
ABE-0285117chiXncRNAforward507204507287Downstream
ABE-0001673ybaPCDScomplement507286508080Downstream
ABE-0001677ybaQCDSforward508218508559Downstream
ABE-0285372repeat_regionforward508582508817Downstream
ABE-0001681copACDScomplement508875511379Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.