Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001681 (copA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001681 showshow history
Names
copA JW0473 ECK0478 ybaR b0484
Product
copper transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 508875 511379 2505 835
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006403 (IPR006403 (DEPRECATED) ATPase, P type, cation/copper-transporter) Apr 2008
Automated Process Approved IPR006121 (IPR006121 Heavy metal-associated domain, HMA) Apr 2008
Automated Process Approved IPR000150 (IPR000150 Cof family) Apr 2008
Automated Process Approved IPR001757 (IPR001757 P-type ATPase) Apr 2008
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR008250 (IPR008250 P-type ATPase, A domain superfamily) Apr 2008
Automated Process Approved IPR006416 (IPR006416 (DEPRECATED) ATPase, P-type, heavy metal translocating) Apr 2008
Automated Process Approved IPR000695 (IPR000695 (DEPRECATED) ATPase, P-type, H+ transporting proton pump) Apr 2008
Automated Process Approved IPR027256 (IPR027256 P-type ATPase, subfamily IB) Jul 2018
Automated Process Approved IPR036163 (IPR036163 Heavy metal-associated domain superfamily) Jul 2018
Automated Process Approved IPR023298 (IPR023298 P-type ATPase, transmembrane domain superfamily) Jul 2018
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF00122 (PF00122 E1-E2 ATPase) Jul 2018
Automated Process Approved PF00702 (PF00702 haloacid dehalogenase-like hydrolase) Jul 2018
Automated Process Approved PF00403 (PF00403 Heavy-metal-associated domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015992 (DEPRECATED) proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006416
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0015662 P-type ion transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0019829 ATPase-coupled cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008250
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015662 P-type ion transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004008 (DEPRECATED) copper-exporting ATPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name copA Experimental - PubMed ID: 11136469
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK0478 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybaR Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0473 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0484 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product copper transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name P-type ATPase, copper transporting, phophatase-like domain Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name Cu(I)-translocating P-type ATPase Experimental - PubMed ID: 11136469
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR000150 Cof family Protein Sequence Similarity - InterPro Domain: IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001757 P-type ATPase Protein Sequence Similarity - InterPro Domain: IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006403 (DEPRECATED) ATPase, P type, cation/copper-transporter Protein Sequence Similarity - InterPro Domain: IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006121 Heavy metal-associated domain, HMA Protein Sequence Similarity - InterPro Domain: IPR006121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023298 P-type ATPase, transmembrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023298
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00122 E1-E2 ATPase Protein Sequence Similarity - PFAM Model Name: PF00122
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00702 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF00702
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00403 Heavy-metal-associated domain Protein Sequence Similarity - PFAM Model Name: PF00403
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036163 Heavy metal-associated domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027256 P-type ATPase, subfamily IB Protein Sequence Similarity - InterPro Domain: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006416 (DEPRECATED) ATPase, P-type, heavy metal translocating Protein Sequence Similarity - InterPro Domain: IPR006416
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008250 P-type ATPase, A domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008250
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000695 (DEPRECATED) ATPase, P-type, H+ transporting proton pump Protein Sequence Similarity - InterPro Domain: IPR000695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.6.3.4 Published Annotation - Swiss-Prot Accession Number: Q59385 Feb 2006
Person Uncurated MultiFun 4.3.A.3 (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The P-type ATPase (P-ATPase) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.36 (transport; substrate; Cu+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13246 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q59385 Published Annotation - Swiss-Prot Accession Number: Q59385 Jan 2006
Automated Process Approved db xref GeneID:946106 Published Annotation - Entrez Gene Database ID: 946106
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786691 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001681 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73586.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015992 (DEPRECATED) proton transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006416
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0015662 P-type ion transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0015662 P-type ion transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001757
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008250
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0019829 ATPase-coupled cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027256
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004008 (DEPRECATED) copper-exporting ATPase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006403
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000492 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000077 copA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000088 copA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000091 copA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000117 copA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003453 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001061 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000831 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001259 copA_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001778 copA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008017 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020793 copA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001116 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001481 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299363 copA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001170 ybaR CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002538 copA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000421 copA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006608 copA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000553 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006023 artI CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000458 ybaR CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003833 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009106 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008664 copA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007771 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076679 copA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000551 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000649 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006004 copA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007898 copA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000441 copA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004972 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001577 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010747 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008329 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005593 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006018 copA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005416 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007192 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009148 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006539 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007864 copA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005960 copA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005802 copA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006637 copA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024481 copA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008897 copA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005246 copA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000672 copA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000482 copA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000486 copA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000630 copA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000684 copA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000630 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000596 copA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000518 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000526 copA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130429 copA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005174 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000516 ybaR CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003883 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000466 copA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003451 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005566 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000352 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003009 copA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000373 copA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003847 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001084 copA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003239 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008759 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002742 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290815 copA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004191 ybar1 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061439 copA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000667 copA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001530 copA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001088 copA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005769 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145532 copA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000763 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004723 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002555 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000629 copA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004823 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001615 copA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001581 copA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005630 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004971 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004329 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007791 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005948 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008991 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004922 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007060 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002240 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002224 ybaR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003081 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005210 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006257 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004652 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008195 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106355 ybaR CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084076 ybaR CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000587 copA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092078 copA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008984 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005327 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004887 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004720 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265255 CDS
Person Approved Go view Shigella boydii 227 ADV-0000417 ybaR CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005816 copA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005171 copA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000485 ybaR CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071409 ybaR CDS
Person Approved Go view Shigella flexneri 301 ABT-0086787 ybaR CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000477 ybaR CDS
Person Approved Go view Shigella sonnei 046 ADD-0000510 copA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002307 VC2215 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001595 copA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001358 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008874 ybaR CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001802 copA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000815 copA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001548 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236171 copA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005374 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003101 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008468 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000429 copA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125650 copA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007564 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007984 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003946 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005045 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004570 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030749 copA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008809 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001219 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003270 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005219 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007032 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001075 ATCU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001261 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003758 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009424 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001589 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 503875 to 516379
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001661fsrCDScomplement503476504696Downstream
ABE-0001668ushACDSforward504914506566Downstream
ABE-0285371repeat_regionforward506576506595Downstream
ABE-0001670ybaKCDScomplement506603507082Downstream
ABE-0285117chiXncRNAforward507204507287Downstream
ABE-0001673ybaPCDScomplement507286508080Downstream
ABE-0001677ybaQCDSforward508218508559Downstream
ABE-0285372repeat_regionforward508582508817Downstream
ABE-0001681copACDScomplement508875511379Matches
ABE-0001688glsACDSforward511641512573Upstream
ABE-0001690ybaTCDSforward512576513868Upstream
ABE-0001693cueRCDSforward513993514400Upstream
ABE-0001695ybbJCDScomplement514401514859Upstream
ABE-0001697qmcACDScomplement514856515773Upstream
ABE-0001703fetACDSforward515919516596Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.