Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001713 (tesA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001713 showshow history
Names
tesA pldC JW0483 ECK0488 apeA b0494
Product
acyl-CoA thioesterase/protease/lysophospholipase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 519139 519765 627 209
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000221
EnteroFam0001713: Trusted threshold=516.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001087 (IPR001087 GDSL lipase/esterase) Apr 2008
Automated Process Approved IPR013830 (IPR013830 SGNH hydrolase-type esterase domain) Apr 2008
Automated Process Approved IPR008265 (IPR008265 Lipase, GDSL, active site) Apr 2008
Automated Process Approved IPR013831 (IPR013831 (DEPRECATED) SGNH hydrolase-type esterase domain) Apr 2008
Automated Process Approved PF13472 (PF13472 GDSL-like Lipase/Acylhydrolase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001087
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013831
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001087
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016298 lipase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008265
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tesA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym apeA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym pldC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0488 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0483 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0494 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product acyl-CoA thioesterase/protease/lysophospholipase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acyl-CoA thioesterase I; also functions as protease I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001713: Trusted threshold=516.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000221
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013830 SGNH hydrolase-type esterase domain Protein Sequence Similarity - InterPro Domain: IPR013830
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001087 GDSL lipase/esterase Protein Sequence Similarity - InterPro Domain: IPR001087
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008265 Lipase, GDSL, active site Protein Sequence Similarity - InterPro Domain: IPR008265
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013831 (DEPRECATED) SGNH hydrolase-type esterase domain Protein Sequence Similarity - InterPro Domain: IPR013831
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13472 GDSL-like Lipase/Acylhydrolase family Protein Sequence Similarity - PFAM Model Name: PF13472
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.1.1.5 Published Annotation - Swiss-Prot Accession Number: P0ADA1 Feb 2006
Person Approved EC number 3.1.2.- Published Annotation - Swiss-Prot Accession Number: P0ADA1 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11542 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945127 Published Annotation - Entrez Gene Database ID: 945127
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ADA1 Published Annotation - Swiss-Prot Accession Number: P0ADA1 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADA1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001713 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786702 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acyl-CoA thioesterase I; also functions as protease I; GO_component: GO:0042597 - periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73596.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001087
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013831
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016298 lipase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008265
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001087
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000221 tesA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001400 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001287 tesA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001456 tesA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001681 tesA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001387 tesA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003480 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004552 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001069 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000838 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001273 tesA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001839 tesA CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0007993 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017313 tesA CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0001138 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001489 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0299402 tesA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001181 tesA CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002529 tesA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000408 tesA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006598 tesA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000564 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006013 tesA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000471 tesA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003817 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009094 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008654 tesA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007761 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076690 tesA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000561 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000660 tesA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005994 tesA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007888 tesA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000455 tesA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004982 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001601 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010769 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008351 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005614 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005996 tesA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005437 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007214 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009170 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006561 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007886 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005939 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005823 tesA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006659 tesA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024501 tesA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007333 tesA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005256 tesA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000825 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000492 tesA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000496 tesA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000620 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000694 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000640 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000607 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174708 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000528 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000542 tesA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130449 tesA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005195 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000530 tesA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002679 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001809 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000474 tesA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003459 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0005592 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000358 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003002 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000379 tesA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003838 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001091 tesA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003232 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008765 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002748 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290858 tesA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061468 tesA CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0000661 tesA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000310 tesA CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0001118 tesA CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0005798 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145514 tesA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002312 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004731 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002547 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000638 tesA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004831 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001652 tesA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001615 tesA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005622 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004979 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004337 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007799 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005956 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008999 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004930 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007068 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002232 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002216 tesA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003073 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005218 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006249 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004660 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008203 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106379 tesA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084068 tesA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000595 tesA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092100 tesA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008976 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005319 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004895 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004697 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266538 CDS
Person Approved Go view Shigella boydii 227 ADV-0000427 tesA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005826 tesA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005161 tesA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000452 tesA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0071419 tesA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0000520 tesA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003676 VCA0783 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001584 tesA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001364 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008854 apeA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001796 tesA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000809 tesA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001554 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236193 tesA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005380 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003093 tesA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008462 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000435 tesA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125633 tesA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007570 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007990 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003952 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005039 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004576 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030756 tesA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008815 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001226 tesA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003262 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005225 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007026 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001081 tesA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001268 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003751 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009465 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001597 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20187mutantTn5 InsertionRequest the StrainABE-0001713tesAtesA::Tn5KAN-2 at position 557 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 514139 to 524765
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001693cueRCDSforward513993514400Downstream
ABE-0001695ybbJCDScomplement514401514859Downstream
ABE-0001697qmcACDScomplement514856515773Downstream
ABE-0001703fetACDSforward515919516596Downstream
ABE-0001705fetBCDSforward516583517362Downstream
ABE-0285373repeat_regionforward517369517394Downstream
ABE-0001707cnoXCDScomplement517425518279Downstream
ABE-0001709ybbOCDScomplement518340519149Overlaps Downstream
ABE-0001713tesACDScomplement519139519765Matches
ABE-0001717ybbACDSforward519733520419Overlaps Upstream
ABE-0001720ybbPCDSforward520416522830Upstream
ABE-0001724rhsDCDSforward523261527541Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.