Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001747 (allA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001747 showshow history
Names
allA glxA2 JW0493 ECK0498 ybbT b0505
Product
ureidoglycolate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 532451 532933 483 161
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007247 (IPR007247 Ureidoglycolate lyase) Apr 2008
Automated Process Approved IPR011051 (IPR011051 RmlC-like cupin domain superfamily) Jul 2018
Automated Process Approved PF04115 (PF04115 Ureidoglycolate lyase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050385 ureidoglycolate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007247
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004848 ureidoglycolate hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name allA Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ybbT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym glxA2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0498 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0493 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0505 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ureidoglycolate hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name ureidoglycolate hydrolase Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011051 RmlC-like cupin domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011051
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007247 Ureidoglycolate lyase Protein Sequence Similarity - InterPro Domain: IPR007247
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04115 Ureidoglycolate lyase Protein Sequence Similarity - PFAM Model Name: PF04115
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.3.19 Published Annotation - Swiss-Prot Accession Number: P77731 Feb 2006
Automated Process Uncurated EC number 4.3.2.3 Published Annotation - Database Name: EC2GO: GO:0050385
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.5 (metabolism; carbon utilization; other compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.26 (metabolism; central intermediary metabolism; allantoin assimilation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13615 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77731 Published Annotation - Swiss-Prot Accession Number: P77731 Jan 2005
Automated Process Approved db xref GI:1786714 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945141 Published Annotation - Entrez Gene Database ID: 945141
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001747 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77731 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0006807 - nitrogen compound metabolic process; GO_process: GO:0009442 - allantoin assimilation pathway Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73607.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0050385 ureidoglycolate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007247
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004848 ureidoglycolate hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003300 allA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003717 allA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005374 allA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003222 allA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001073 allA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001848 allA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006588 allA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000570 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006002 allA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000476 allA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003812 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009088 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009346 allA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076695 allA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000567 allA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000671 allA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005985 allA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007879 allA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000461 allA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004991 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001611 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010778 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008360 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005623 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005987 allA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005446 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007223 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009179 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006570 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007898 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005930 allA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005831 allA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006668 allA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024511 allA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007338 allA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005261 allA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000830 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000502 allA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000506 allA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000738 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000699 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000692 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000612 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174712 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000540 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000547 allA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130458 allA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005205 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000535 ybbT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003311 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003727 allA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004740 allA CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000647 allA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004840 allA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001685 allA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001644 allA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005612 allA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004988 allA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004347 allA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005965 allA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009008 allA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004939 allA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007077 allA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002223 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002207 allA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003062 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005227 allA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006240 allA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000606 allA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092128 allA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008967 allA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005310 allA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004904 allA CDS
Person Approved Go view Shigella boydii 227 ADV-0000442 ybbT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005837 allA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005155 allA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000443 ybbT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071425 ybbT CDS
Person Approved Go view Shigella flexneri 301 ABT-0086801 ybbT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000492 ybbT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003291 allA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 527451 to 537933
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001724rhsDCDSforward523261527541Upstream
ABE-0001726ybbCCDSforward527581527949Upstream
ABE-0001729ylbHpseudogeneforward527951528659Upstream
ABE-0001731ybbDpseudogeneforward528640529130Upstream
ABE-0285234ylbIpseudogeneforward529497529591Upstream
ABE-0001736ylbGpseudogenecomplement529605530016Upstream
ABE-0001740selUCDScomplement530132531226Upstream
ABE-0001742allSCDScomplement531295532221Upstream
ABE-0001747allACDSforward532451532933Matches
ABE-0001750allRCDSforward533011533826Downstream
ABE-0285849allZncRNAforward533629533863Downstream
ABE-0001754gclCDSforward533916535697Downstream
ABE-0001756hyiCDSforward535710536486Downstream
ABE-0001759glxRCDSforward536586537464Downstream
ABE-0001764ybbWCDSforward537633539087Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.