Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001756 (hyi) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001756 showshow history
Names
hyi ybbG JW0496 ECK0501 gip b0508
Product
hydroxypyruvate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 535710 536486 777 259
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Apr 2008
Automated Process Approved IPR013022 (IPR013022 Xylose isomerase-like, TIM barrel domain) Jul 2018
Automated Process Approved IPR017643 (IPR017643 Hydroxypyruvate isomerase) Jul 2018
Automated Process Approved IPR036237 (IPR036237 Xylose isomerase-like superfamily) Jul 2018
Automated Process Approved PF01261 (PF01261 Xylose isomerase-like TIM barrel) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hyi Experimental - PubMed ID: 10561547
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK0501 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gip Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0496 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ybbG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0508 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product hydroxypyruvate isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name hydroxpyruvate isomerase Experimental - PubMed ID: 10561547
Reference: Escherichia coli 		Jan 2006
Person Uncurated alternate product name hydroxypyruvate isomerase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR013022 Xylose isomerase-like, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR013022
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036237 Xylose isomerase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01261 Xylose isomerase-like TIM barrel Protein Sequence Similarity - PFAM Model Name: PF01261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017643 Hydroxypyruvate isomerase Protein Sequence Similarity - InterPro Domain: IPR017643
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.3.1.22 Published Annotation - Swiss-Prot Accession Number: P30147 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30147 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P30147 Published Annotation - Swiss-Prot Accession Number: P30147 Jan 2005
Automated Process Approved db xref GeneID:946186 Published Annotation - Entrez Gene Database ID: 946186
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001756 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786718 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11584 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function phenotype; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73610.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006034 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003379 hyi CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000747 hyi CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005235 hyi CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003245 hyi CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001076 hyi CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001851 hyi_1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006585 hyi CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000573 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005999 hyi CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000479 hyi CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003809 hyi CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009085 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009343 hyi CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008490 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076698 hyi CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000570 hyi CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000674 hyi CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005982 hyi CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007876 hyi CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000464 hyi CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004994 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001614 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010781 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008363 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005626 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005984 hyi CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005449 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007226 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009182 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006573 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007901 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005927 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005834 hyi CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006671 hyi CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024514 hyi CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007341 hyi CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005264 hyi CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000833 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000505 hyi CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000509 hyi CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000741 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000702 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000689 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000615 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174715 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000543 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000550 hyi CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130461 hyi CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005208 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000538 hyi CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000150 hyi CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004743 hyi CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000650 gip CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004843 hyi CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001695 gip CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001654 gip CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005609 hyi CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004991 hyi CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004350 hyi CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005968 hyi CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009011 hyi CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004942 hyi CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007080 hyi CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002220 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002204 hyi CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003058 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005230 hyi CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006237 hyi CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106407 hyi CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084056 hyi CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000609 gip CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092137 gip CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008964 hyi CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005307 hyi CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004907 hyi CDS
Person Uncurated Go view Shigella boydii 227 ADV-0005152 hyi pseudogene
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005152 hyi CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0071428 hyi pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0286362 hyi pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0004724 hyi pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0000542 hyi pseudogene
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000057 hyi CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003294 hyi CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 530710 to 541486
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001740selUCDScomplement530132531226Upstream
ABE-0001742allSCDScomplement531295532221Upstream
ABE-0001747allACDSforward532451532933Upstream
ABE-0001750allRCDSforward533011533826Upstream
ABE-0285849allZncRNAforward533629533863Upstream
ABE-0001754gclCDSforward533916535697Upstream
ABE-0001756hyiCDSforward535710536486Matches
ABE-0001759glxRCDSforward536586537464Downstream
ABE-0001764ybbWCDSforward537633539087Downstream
ABE-0001768allBCDSforward539147540508Downstream
ABE-0001771ybbYCDSforward540565541866Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.