Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001768 (allB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001768 showshow history
Names
allB glxB3 JW0500 ECK0505 ybbX b0512
Product
allantoinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 539147 540508 1362 454
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005847 (IPR005847 (DEPRECATED) Dihydroorotase region) Apr 2008
Automated Process Approved IPR006680 (IPR006680 Amidohydrolase-related) Apr 2008
Automated Process Approved IPR011059 (IPR011059 Metal-dependent hydrolase, composite domain superfamily) Apr 2008
Automated Process Approved IPR017593 (IPR017593 Allantoinase) Jul 2018
Automated Process Approved IPR032466 (IPR032466 Metal-dependent hydrolase) Jul 2018
Automated Process Approved PF01979 (PF01979 Amidohydrolase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050897 cobalt ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004038 allantoinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name allB Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK0505 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym glxB3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0500 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybbX Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0512 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product allantoinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name allantoinase Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR006680 Amidohydrolase-related Protein Sequence Similarity - InterPro Domain: IPR006680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01979 Amidohydrolase family Protein Sequence Similarity - PFAM Model Name: PF01979
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017593 Allantoinase Protein Sequence Similarity - InterPro Domain: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR032466 Metal-dependent hydrolase Protein Sequence Similarity - InterPro Domain: IPR032466
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011059 Metal-dependent hydrolase, composite domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005847 (DEPRECATED) Dihydroorotase region Protein Sequence Similarity - InterPro Domain: IPR005847
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.5.-.- Published Annotation - Database Name: EC2GO: GO:0016810
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.5.2.5 Published Annotation - Swiss-Prot Accession Number: P77671 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.5 (metabolism; carbon utilization; other compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.26 (metabolism; central intermediary metabolism; allantoin assimilation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13619 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77671 Published Annotation - Swiss-Prot Accession Number: P77671 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77671 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945134 Published Annotation - Entrez Gene Database ID: 945134
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0001768 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786722 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006807 - nitrogen compound metabolic process; GO_process: GO:0009442 - allantoin assimilation pathway Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73614.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050897 cobalt ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004038 allantoinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005631 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003592 allB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003780 allB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007090 allB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003192 allB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001079 allB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001855 allB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006580 allB CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000576 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005996 allB CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000482 allB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003806 allB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009082 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009340 allB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008487 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076701 allB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000573 allB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000677 allB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005979 allB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007873 allB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000467 allB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004997 allB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001618 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0285152 allB pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007344 allB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005267 allB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000836 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000509 allB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000513 allB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000744 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000705 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000686 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000618 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174718 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000546 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000553 allB CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285094 allB pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005211 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000541 ybbX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004747 allB CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000654 allB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004847 allB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001709 allB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001667 allB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005605 allB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004995 allB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004355 allB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005972 allB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009015 allB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004946 allB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007084 allB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002216 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002200 allB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003054 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005234 allB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006233 allB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106415 allB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084052 allB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000614 allB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092148 allB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008960 allB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005303 allB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004911 allB CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0000541 allB pseudogene
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003297 allB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 534147 to 545508
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001754gclCDSforward533916535697Upstream
ABE-0001756hyiCDSforward535710536486Upstream
ABE-0001759glxRCDSforward536586537464Upstream
ABE-0001764ybbWCDSforward537633539087Upstream
ABE-0001768allBCDSforward539147540508Matches
ABE-0001771ybbYCDSforward540565541866Downstream
ABE-0001773glxKCDSforward541888543033Downstream
ABE-0285374repeat_regionforward543087543183Downstream
ABE-0001775allECDScomplement543261544046Downstream
ABE-0001777allCCDScomplement544057545292Downstream
ABE-0001780allDCDScomplement545314546363Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.