Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001773 (glxK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001773 showshow history
Names
glxK glxB5 JW0502 ECK0507 ybbZ b0514
Product
glycerate kinase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 541888 543033 1146 382
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004381 (IPR004381 Glycerate kinase) Apr 2008
Automated Process Approved IPR036129 (IPR036129 Glycerate kinase superfamily) Jul 2018
Automated Process Approved PF02595 (PF02595 Glycerate kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0031388 organic acid phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009441 glycolate metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008887 glycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glxK Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ybbZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym glxB5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0502 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0507 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0514 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycerate kinase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glycerate kinase II Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name glycerate kinase Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR036129 Glycerate kinase superfamily Protein Sequence Similarity - InterPro Domain: IPR036129
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004381 Glycerate kinase Protein Sequence Similarity - InterPro Domain: IPR004381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02595 Glycerate kinase family Protein Sequence Similarity - PFAM Model Name: PF02595
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.31 Published Annotation - Swiss-Prot Accession Number: P77364 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.25 (metabolism; central intermediary metabolism; glycolate metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.26 (metabolism; central intermediary metabolism; allantoin assimilation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001773 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77364 Published Annotation - Swiss-Prot Accession Number: P77364 Jan 2005
Automated Process Approved db xref GI:1786724 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945129 Published Annotation - Entrez Gene Database ID: 945129
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77364 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009441 - glycolate metabolic process; GO_process: GO:0009442 - allantoin assimilation pathway Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73616.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0031388 organic acid phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009441 glycolate metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008887 glycerate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006640 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002899 glxK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000031 glxK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006524 glxK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003127 glxK CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001081 glxK CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0006578 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000578 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0005994 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000485 glxK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003804 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009080 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0009338 CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0008485 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076703 glxK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000575 glxK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000679 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0005977 CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0007871 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000469 glxK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005000 CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0001621 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0010787 CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0008369 CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0005632 CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0005979 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005455 CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0007232 CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0009188 CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006579 CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0007907 CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0005921 CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0005840 CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006677 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024521 glxK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007346 glxK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005269 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000511 glxK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000515 glxK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000746 glxK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000707 glxK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000684 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000620 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174720 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000548 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000558 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130468 glxK CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005214 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000543 ybbZ CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0004749 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000656 glxK CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0004849 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0001716 glxK CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0001673 glxK CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0005603 CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0004997 CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0004357 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0005974 CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0009017 CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0004948 CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0007086 CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0002214 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002198 glxK CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0003052 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0005236 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0006231 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106419 glxK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084050 glxK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000616 glxK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092154 glxK CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0008958 CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0005301 CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0004913 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265336 CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0005210 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003796 VCA0903 CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0003299 glxK_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 536888 to 548033
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001759glxRCDSforward536586537464Upstream
ABE-0001764ybbWCDSforward537633539087Upstream
ABE-0001768allBCDSforward539147540508Upstream
ABE-0001771ybbYCDSforward540565541866Upstream
ABE-0001773glxKCDSforward541888543033Matches
ABE-0285374repeat_regionforward543087543183Downstream
ABE-0001775allECDScomplement543261544046Downstream
ABE-0001777allCCDScomplement544057545292Downstream
ABE-0001780allDCDScomplement545314546363Downstream
ABE-0001784fdrACDSforward546680548347Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.