Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001777 (allC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001777 showshow history
Names
allC glxB7 JW0504 ECK0509 ylbB b0516
Product
allantoate amidohydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 544057 545292 1236 412
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011650 (IPR011650 Peptidase M20, dimerisation domain) Apr 2008
Automated Process Approved IPR010158 (IPR010158 Amidase, carbamoylase-type) Apr 2008
Automated Process Approved IPR002933 (IPR002933 Peptidase M20) Apr 2008
Automated Process Approved IPR017591 (IPR017591 Allantoate amidohydrolase) Jul 2018
Automated Process Approved IPR036264 (IPR036264 Bacterial exopeptidase dimerisation domain) Jul 2018
Automated Process Approved PF01546 (PF01546 Peptidase family M20/M25/M40) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010158
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0042803 protein homodimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0047652 allantoate deiminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name allC Experimental - PubMed ID: 10601204
Reference: Escherichia coli
Aug 2002
Person Approved synonym ylbB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK0509 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0504 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym glxB7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b0516 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product allantoate amidohydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name allantoate amidohydrolase Experimental - PubMed ID: 10601204
Reference: Escherichia coli
Jan 2006
Protein Family
Automated Process Approved protein family IPR010158 Amidase, carbamoylase-type Protein Sequence Similarity - InterPro Domain: IPR010158
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002933 Peptidase M20 Protein Sequence Similarity - InterPro Domain: IPR002933
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036264 Bacterial exopeptidase dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR036264
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011650 Peptidase M20, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR011650
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF01546 Peptidase family M20/M25/M40 Protein Sequence Similarity - PFAM Model Name: PF01546
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR017591 Allantoate amidohydrolase Protein Sequence Similarity - InterPro Domain: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Automated Process Uncurated EC number 3.5.3.9 Published Annotation - Database Name: EC2GO: GO:0047652
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 3.5.3.- Published Annotation - Swiss-Prot Accession Number: P77425 Feb 2006
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.26 (metabolism; central intermediary metabolism; allantoin assimilation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.5 (metabolism; carbon utilization; other compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13623 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786726 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P77425 Published Annotation - Swiss-Prot Accession Number: P77425 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77425 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945150 Published Annotation - Entrez Gene Database ID: 945150
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0001777 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function phenotype; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_process: GO:0006807 - nitrogen compound metabolic process; GO_process: GO:0009442 - allantoin assimilation pathway Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73618.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010158
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002933
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0047652 allantoate deiminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0042803 protein homodimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017591
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010158
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000482 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001947 allC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001598 allC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005232 allC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001408 allC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001089 allC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001860 allC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005427 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016005 allC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003342 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006576 allC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000580 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005992 allC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000487 allC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003801 allC CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0009077 allC pseudogene
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009336 allC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008483 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076705 allC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000577 allC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000681 allC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007868 allC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000471 allC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005003 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001624 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010789 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008371 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005634 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005977 allC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005457 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007234 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009190 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006581 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007909 allC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005919 allC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005842 allC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006679 allC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024523 allC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007348 allC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005272 allC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000841 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000513 allC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000517 allC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000748 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000709 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000682 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000622 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174722 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000550 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000560 allC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130470 allC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005216 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000545 ylbB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000145 allC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004751 allC CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000658 allC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004851 allC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001722 allC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001679 allC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005601 allC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004999 allC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004359 allC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005976 allC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009019 allC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004950 allC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007088 allC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002212 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002196 allC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003050 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005238 allC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006229 allC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106422 allC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084048 allC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000618 allC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092159 allC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008956 allC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005299 allC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004915 allC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005212 allC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071433 allC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0086807 ylbB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000498 ylbB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001063 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002489 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003301 argE1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002401 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 539057 to 550292
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001764ybbWCDSforward537633539087Downstream
ABE-0001768allBCDSforward539147540508Downstream
ABE-0001771ybbYCDSforward540565541866Downstream
ABE-0001773glxKCDSforward541888543033Downstream
ABE-0285374repeat_regionforward543087543183Downstream
ABE-0001775allECDScomplement543261544046Downstream
ABE-0001777allCCDScomplement544057545292Matches
ABE-0001780allDCDScomplement545314546363Upstream
ABE-0001784fdrACDSforward546680548347Upstream
ABE-0285105ylbECDSforward548357549616Upstream
ABE-0001789ylbFCDSforward549627550442Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.