Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001780 (allD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001780 showshow history
Names
allD glxB8 JW0505 ECK0510 ylbC b0517
Product
ureidoglycolate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 545314 546363 1050 350
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003767 (IPR003767 Malate/L-lactate dehydrogenase-like) Apr 2008
Automated Process Approved IPR017590 (IPR017590 Ureidoglycolate dehydrogenase) Jul 2018
Automated Process Approved IPR036111 (IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily) Jul 2018
Automated Process Approved PF02615 (PF02615 Malate/L-lactate dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003767, IPR036111
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name allD Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ylbC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym glxB8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0505 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0510 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0517 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ureidoglycolate dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name ureidoglycolate dehydrogenase Experimental - PubMed ID: 10601204
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR003767 Malate/L-lactate dehydrogenase-like Protein Sequence Similarity - InterPro Domain: IPR003767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02615 Malate/L-lactate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF02615
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036111
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017590 Ureidoglycolate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR017590
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.1.1.154 Published Annotation - Swiss-Prot Accession Number: P77555 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.5 (metabolism; carbon utilization; other compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.26 (metabolism; central intermediary metabolism; allantoin assimilation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786727 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77555 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948342 Published Annotation - Entrez Gene Database ID: 948342
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13624 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001780 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77555 Published Annotation - Swiss-Prot Accession Number: P77555 Jan 2005
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006807 - nitrogen compound metabolic process; GO_process: GO:0009442 - allantoin assimilation pathway Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73619.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003767, IPR036111
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009442 allantoin assimilation pathway Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006642 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003421 allD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003708 allD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005255 allD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003204 allD CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001090 allD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001861 allD_1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006575 allD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000581 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005991 allD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000488 allD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003800 allD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009076 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009335 allD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008482 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076706 allD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000578 allD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000682 allD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005973 allD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007867 allD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000472 allD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005004 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001625 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010790 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008372 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005635 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005976 allD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005458 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007235 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009191 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006582 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007910 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005918 allD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005843 allD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006680 allD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024524 allD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007349 allD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005273 allD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000842 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000514 allD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000518 allD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000749 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000710 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000681 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000623 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174723 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000551 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000561 allD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130471 allD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005217 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000546 allD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000144 allD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004752 allD CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000659 allD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004852 allD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001725 allD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001682 allD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005600 allD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005000 allD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004360 allD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005977 allD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009020 allD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004951 allD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007089 allD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002211 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002195 allD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003049 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005239 allD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006228 allD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106424 allD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084047 allD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000619 allD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092162 allD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008955 allD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005298 allD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004916 allD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003302 allD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 540314 to 551363
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001768allBCDSforward539147540508Downstream
ABE-0001771ybbYCDSforward540565541866Downstream
ABE-0001773glxKCDSforward541888543033Downstream
ABE-0285374repeat_regionforward543087543183Downstream
ABE-0001775allECDScomplement543261544046Downstream
ABE-0001777allCCDScomplement544057545292Downstream
ABE-0001780allDCDScomplement545314546363Matches
ABE-0001784fdrACDSforward546680548347Upstream
ABE-0285105ylbECDSforward548357549616Upstream
ABE-0001789ylbFCDSforward549627550442Upstream
ABE-0001791ybcFCDSforward550439551332Upstream
ABE-0285375repeat_regionforward551354551510Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.