Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001794 (purK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001794 showshow history
Names
purK JW0511 ECK0515 purE2 b0522
Product
N5-carboxyaminoimidazole ribonucleotide synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 551527 552594 1068 356
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000224
EnteroFam0001794: Trusted threshold=977.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Apr 2008
Automated Process Approved IPR013817 (IPR013817 (DEPRECATED) Pre-ATP-grasp fold) Apr 2008
Automated Process Approved IPR003135 (IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type) Apr 2008
Automated Process Approved IPR011054 (IPR011054 Rudiment single hybrid motif) Apr 2008
Automated Process Approved IPR005875 (IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit) Apr 2008
Automated Process Approved IPR011761 (IPR011761 ATP-grasp fold) Apr 2008
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2018
Automated Process Approved PF02222 (PF02222 ATP-grasp domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009320 phosphoribosylaminoimidazole carboxylase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004638 phosphoribosylaminoimidazole carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0515 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0511 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym purE2 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0522 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product N5-carboxyaminoimidazole ribonucleotide synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001794: Trusted threshold=977.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000224
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013817 (DEPRECATED) Pre-ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR013817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02222 ATP-grasp domain Protein Sequence Similarity - PFAM Model Name: PF02222
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Protein Sequence Similarity - InterPro Domain: IPR003135
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011054 Rudiment single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011054
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit Protein Sequence Similarity - InterPro Domain: IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011761 ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR011761
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.1.21 Published Annotation - Swiss-Prot Accession Number: P09029 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09029 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945153 Published Annotation - Entrez Gene Database ID: 945153
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10796 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786733 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P09029 Published Annotation - Swiss-Prot Accession Number: P09029 Jan 2005
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype signature-tagged mutagenized purK; mutant shows moderately reduced kinetics of lethality in mice Experimental - PubMed ID: 14742535
Reference: Yersinia pestis Kimberly53 		Nov 2005
Person Uncurated mutant phenotype signature-tagged mutagenized purK; mutant introduced into mice shows reduced ability to infect spleen Experimental - PubMed ID: 14742535
Reference: Yersinia pestis Kimberly53 		Nov 2005
Person Uncurated mutant phenotype signature-tagged mutagenized purK; mutant shows moderately reduced ability to compete in mice when coinnoculated with wild-type strain Experimental - PubMed ID: 14742535
Reference: Yersinia pestis Kimberly53 		Nov 2005
Automated Process Approved note phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73624.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009320 phosphoribosylaminoimidazole carboxylase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004638 phosphoribosylaminoimidazole carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000224 purK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000994 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000880 purK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001045 purK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000648 purK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001355 purK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002336 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001433 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001096 purK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000851 purK CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001278 purK CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001866 purK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005860 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017169 purK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003023 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001494 purK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299417 purK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001183 purK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002526 purK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000403 purK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006569 purK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000586 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005986 purK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000493 purK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003795 purK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009071 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009329 purK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008477 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076711 purK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000584 purK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000688 purK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005968 purK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007861 purK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000477 purK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005010 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001630 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010795 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008377 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005640 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005971 purK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005463 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007240 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009196 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006587 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007915 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005913 purK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005848 purK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006685 purK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024529 purK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007354 purK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005279 purK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000847 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000519 purK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000525 purK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000754 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000715 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000676 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000628 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179608 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000556 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000566 purK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130476 purK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005222 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000551 purK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002676 purK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001813 purK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000479 purK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003464 purK CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007532 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000361 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002999 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000382 purK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003835 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001094 purK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003229 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008768 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002751 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290863 purK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004200 purK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063445 purK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002718 purK CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001975 purK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000422 purK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008010 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145492 purK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005578 purK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004757 purK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002540 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000664 purK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004857 purK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001737 purK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001692 purK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005595 purK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005006 purK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004365 purK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007807 purK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005982 purK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009025 purK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004956 purK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007095 purK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002206 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002190 purK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003044 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005245 purK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006223 purK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004668 purK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008211 purK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106431 purK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084042 purK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000624 purK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092175 purK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008949 purK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005293 purK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004921 purK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004693 purK CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267191 purK CDS
Person Approved Go view Shigella boydii 227 ADV-0000455 purK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005850 purK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005221 purK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000300 purK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071437 purK CDS
Person Approved Go view Shigella flexneri 301 ABT-0086810 purK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000501 purK CDS
Person Approved Go view Shigella sonnei 046 ADD-0000534 purK CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001326 purK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000052 VC0051 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000403 purK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001572 purK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001367 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008841 purK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001793 purK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000806 purK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001557 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236209 purK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005383 purK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003089 purK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008459 purK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000438 purK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125616 purK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007573 purK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007993 purK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003955 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005036 purK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004579 purK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030759 purK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008818 purK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001232 purK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003258 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005228 purK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007023 purK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001084 purK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001272 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003747 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009492 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001604 purK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20194mutantTn5 InsertionRequest the StrainABE-0001794purKpurK::Tn5KAN-2 at position 472 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 546527 to 557594
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001784fdrACDSforward546680548347Downstream
ABE-0285105ylbECDSforward548357549616Downstream
ABE-0001789ylbFCDSforward549627550442Downstream
ABE-0001791ybcFCDSforward550439551332Downstream
ABE-0285375repeat_regionforward551354551510Downstream
ABE-0001794purKCDScomplement551527552594Matches
ABE-0001796purECDScomplement552591553100Overlaps Upstream
ABE-0001804lpxHCDScomplement553218553940Upstream
ABE-0001806ppiBCDScomplement553943554437Upstream
ABE-0001810cysSCDSforward554611555996Upstream
ABE-0285376repeat_regionforward556007556032Upstream
ABE-0001812ybcICDScomplement556032556553Upstream
ABE-0001816ybcJCDScomplement556661556873Upstream
ABE-0001818folDCDScomplement556875557741Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.