Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001796 (purE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001796 showshow history
Names
purE JW0512 ade ECK0516 Pur2 adef ade3 b0523
Product
N5-carboxyaminoimidazole ribonucleotide mutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 552591 553100 510 170
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000225
EnteroFam0001796: Trusted threshold=453.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000031 (IPR000031 PurE domain) Apr 2008
Automated Process Approved IPR035893 (IPR035893 (DEPRECATED) PurE domain superfamily) Jul 2018
Automated Process Approved PF00731 (PF00731 AIR carboxylase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009320 phosphoribosylaminoimidazole carboxylase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004638 phosphoribosylaminoimidazole carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym adef Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym Pur2 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0512 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ade Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ade3 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0516 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0523 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product N5-carboxyaminoimidazole ribonucleotide mutase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001796: Trusted threshold=453.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000225
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR035893 (DEPRECATED) PurE domain superfamily Protein Sequence Similarity - InterPro Domain: IPR035893
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00731 AIR carboxylase Protein Sequence Similarity - PFAM Model Name: PF00731
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000031 PurE domain Protein Sequence Similarity - InterPro Domain: IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.1.21 Published Annotation - Swiss-Prot Accession Number: P0AG18 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10793 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786734 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:949031 Published Annotation - Entrez Gene Database ID: 949031
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG18 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001796 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AG18 Published Annotation - Swiss-Prot Accession Number: P0AG18 Jan 2006
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73625.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009320 phosphoribosylaminoimidazole carboxylase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004638 phosphoribosylaminoimidazole carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000225 purE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000993 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000604 purE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000678 purE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000649 purE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000527 purE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002337 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001432 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001097 purE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000852 purE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001279 purE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001867 purE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005861 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017168 purE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003022 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001495 purE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299419 purE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001184 purE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002525 purE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000402 purE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006568 purE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000587 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005985 purE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000494 purE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003794 purE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009070 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009328 purE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008476 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076712 purE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000585 purE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000689 purE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005967 purE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007860 purE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000478 purE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005011 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001631 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010796 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008378 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005641 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005970 purE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005464 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007241 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009197 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006588 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007916 purE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005912 purE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005849 purE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006686 purE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024530 purE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007355 purE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005280 purE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000848 purE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000520 purE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000526 purE CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000629 purE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000557 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000567 purE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130477 purE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005223 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000552 purE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002675 purE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001814 purE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000480 purE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003465 purE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007531 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000362 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002998 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000383 purE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003834 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001095 purE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003228 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008769 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002752 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290864 purE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004201 purE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063444 purE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002710 purE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001974 purE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000421 purE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008009 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145490 purE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005579 purE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004758 purE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002539 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000665 purE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004858 purE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001739 purE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001694 purE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005594 purE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005007 purE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004366 purE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007808 purE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005983 purE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009026 purE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004957 purE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007096 purE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002205 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002189 purE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003043 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005246 purE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006222 purE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004669 purE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008212 purE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106433 purE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084041 purE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000625 purE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092177 purE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008948 purE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005292 purE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004922 purE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004692 purE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267190 purE CDS
Person Approved Go view Shigella boydii 227 ADV-0000454 purE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005849 purE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005222 purE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000301 purE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071438 purE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086811 purE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000502 purE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000533 purE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000053 VC0052 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000402 purE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001570 purE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001368 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008839 purE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001792 purE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000805 purE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001558 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236210 purE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005384 purE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003088 purE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008458 purE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000439 purE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125614 purE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007574 purE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007994 purE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003956 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005035 purE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004580 purE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030760 purE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008819 purE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001233 purE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003257 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005229 purE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007022 purE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001085 purE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001273 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003746 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009495 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001605 purE CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0001796 purE lambda repressor assay Doodle - bnumber: b0523 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20195mutantTn5 InsertionRequest the StrainABE-0001796purEpurE::Tn5KAN-2 at position 251 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 547591 to 558100
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001784fdrACDSforward546680548347Downstream
ABE-0285105ylbECDSforward548357549616Downstream
ABE-0001789ylbFCDSforward549627550442Downstream
ABE-0001791ybcFCDSforward550439551332Downstream
ABE-0285375repeat_regionforward551354551510Downstream
ABE-0001794purKCDScomplement551527552594Overlaps Downstream
ABE-0001796purECDScomplement552591553100Matches
ABE-0001804lpxHCDScomplement553218553940Upstream
ABE-0001806ppiBCDScomplement553943554437Upstream
ABE-0001810cysSCDSforward554611555996Upstream
ABE-0285376repeat_regionforward556007556032Upstream
ABE-0001812ybcICDScomplement556032556553Upstream
ABE-0001816ybcJCDScomplement556661556873Upstream
ABE-0001818folDCDScomplement556875557741Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.